| Nomenclature |
|---|
| HGNC (Hugo) | WASHC2C 23414 |
| Cards |
|---|
| Entrez_Gene (NCBI) | WASHC2C WASH complex subunit 2C |
| Aliases | FAM21A; FAM21C; VPEF |
| GeneCards (Weizmann) | WASHC2C |
| Ensembl hg19 (Hinxton) | ENSG00000172661 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000172661 [Gene_View] ENSG00000172661 [Sequence] chr10:45727200-45792964 [Contig_View] WASHC2C [Vega] |
| ICGC DataPortal | ENSG00000172661 |
| TCGA cBioPortal | WASHC2C |
| AceView (NCBI) | WASHC2C |
| Genatlas (Paris) | WASHC2C |
| SOURCE (Princeton) | WASHC2C |
| Genetics Home Reference (NIH) | WASHC2C |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | WASHC2C - chr10:45727200-45792964 + 10q11.22 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | WASHC2C - 10q11.22 [Description] (hg19-Feb_2009) |
| GoldenPath | WASHC2C - 10q11.22 [CytoView hg19] WASHC2C - 10q11.22 [CytoView hg38] |
| ImmunoBase | ENSG00000172661 |
| genome Data Viewer NCBI | WASHC2C [Mapview hg19] |
| OMIM | 613631 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AB011164 AI023041 AI356516 AK001545 AK291430 |
| RefSeq transcript (Entrez) | NM_001169106 NM_001169107 NM_001330074 NM_001367393 NM_001367394 NM_001367395 NM_001367396 NM_001367397 NM_001367398 NM_001367399 NM_001367400 NM_001367401 NM_001367402 NM_001367403 NM_001367404 NM_001367405 NM_001367406 NM_001367407 NM_001367408 NM_001367409 NM_001367410 NM_001367411 NM_001367412 NM_001367413 NM_001367414 NM_001367415 NM_001367416 NM_015262 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | WASHC2C |
| Alternative Splicing Gallery | ENSG00000172661 |
| Gene Expression | WASHC2C [ NCBI-GEO ] WASHC2C [ EBI - ARRAY_EXPRESS ]
WASHC2C [ SEEK ] WASHC2C [ MEM ] |
| Gene Expression Viewer (FireBrowse) | WASHC2C [ Firebrowse - Broad ] |
| Genevisible | Expression of WASHC2C in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 253725 |
| GTEX Portal (Tissue expression) | WASHC2C |
| Human Protein Atlas | ENSG00000172661-WASHC2C [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q9Y4E1 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q9Y4E1 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q9Y4E1 |
| Splice isoforms : SwissVar | Q9Y4E1 |
| PhosPhoSitePlus | Q9Y4E1 |
| Domains : Interpro (EBI) | FAM21/CAPZIP |
| Domain families : Pfam (Sanger) | CAP-ZIP_m (PF15255) |
| Domain families : Pfam (NCBI) | pfam15255 |
| Conserved Domain (NCBI) | WASHC2C |
| Blocks (Seattle) | WASHC2C |
| Superfamily | Q9Y4E1 |
| Human Protein Atlas [tissue] | ENSG00000172661-WASHC2C [tissue] |
| Peptide Atlas | Q9Y4E1 |
| HPRD | 11094 |
| IPI | IPI00514705 IPI00456853 IPI00556261 IPI00954966 IPI01011204 IPI01011198 IPI00954891 IPI00966110 IPI00871172 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q9Y4E1 |
| IntAct (EBI) | Q9Y4E1 |
| BioGRID | WASHC2C |
| STRING (EMBL) | WASHC2C |
| ZODIAC | WASHC2C |
| Ontologies - Pathways |
|---|
| QuickGO | Q9Y4E1 |
| Ontology : AmiGO | protein binding phosphatidylinositol-4,5-bisphosphate binding phosphatidylinositol-3,4,5-trisphosphate binding nucleolus endosome early endosome cytosol plasma membrane phosphatidylinositol-5-phosphate binding protein transport early endosome membrane phosphatidylinositol-3-phosphate binding protein localization to endosome retrograde transport, endosome to Golgi intracellular membrane-bounded organelle phosphatidylinositol-3,4-bisphosphate binding phosphatidylinositol-4-phosphate binding WASH complex phosphatidylinositol-3,5-bisphosphate binding regulation of substrate adhesion-dependent cell spreading retromer complex binding retromer complex binding retrograde transport, endosome to plasma membrane negative regulation of barbed-end actin filament capping |
| Ontology : EGO-EBI | protein binding phosphatidylinositol-4,5-bisphosphate binding phosphatidylinositol-3,4,5-trisphosphate binding nucleolus endosome early endosome cytosol plasma membrane phosphatidylinositol-5-phosphate binding protein transport early endosome membrane phosphatidylinositol-3-phosphate binding protein localization to endosome retrograde transport, endosome to Golgi intracellular membrane-bounded organelle phosphatidylinositol-3,4-bisphosphate binding phosphatidylinositol-4-phosphate binding WASH complex phosphatidylinositol-3,5-bisphosphate binding regulation of substrate adhesion-dependent cell spreading retromer complex binding retromer complex binding retrograde transport, endosome to plasma membrane negative regulation of barbed-end actin filament capping |
| NDEx Network | WASHC2C |
| Atlas of Cancer Signalling Network | WASHC2C |
| Wikipedia pathways | WASHC2C |
| Orthology - Evolution |
|---|
| OrthoDB | 253725 |
| GeneTree (enSembl) | ENSG00000172661 |
| Phylogenetic Trees/Animal Genes : TreeFam | WASHC2C |
| HOGENOM | Q9Y4E1 |
| Homologs : HomoloGene | WASHC2C |
| Homology/Alignments : Family Browser (UCSC) | WASHC2C |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | WASHC2C |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | WASHC2C [hg38] |
| dbVar | WASHC2C |
| ClinVar | WASHC2C |
| Monarch | WASHC2C |
| 1000_Genomes | WASHC2C |
| Exome Variant Server | WASHC2C |
| GNOMAD Browser | ENSG00000172661 |
| Varsome Browser | WASHC2C |
| Genomic Variants (DGV) | WASHC2C [DGVbeta] |
| DECIPHER | WASHC2C [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | WASHC2C |
| Mutations |
|---|
| ICGC Data Portal | WASHC2C |
| TCGA Data Portal | WASHC2C |
| Broad Tumor Portal | WASHC2C |
| OASIS Portal | WASHC2C [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | WASHC2C [overview] [genome browser] [tissue] [distribution] |
| Somatic Mutations in Cancer : COSMIC3D | WASHC2C |
| Mutations and Diseases : HGMD | WASHC2C |
| BioMuta | search WASHC2C |
| DgiDB (Drug Gene Interaction Database) | WASHC2C |
| DoCM (Curated mutations) | WASHC2C (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | WASHC2C (select a term) |
| intoGen | WASHC2C |
| Cancer3D | WASHC2C(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 613631 |
| Orphanet | |
| DisGeNET | WASHC2C |
| Medgen | WASHC2C |
| Genetic Testing Registry | WASHC2C
|
| NextProt | Q9Y4E1 [Medical] |
| GENETests | WASHC2C |
| Target Validation | WASHC2C |
| Huge Navigator |
WASHC2C [HugePedia] |
| ClinGen | WASHC2C |
| Clinical trials, drugs, therapy |
|---|
| MyCancerGenome | WASHC2C |
| Protein Interactions : CTD | |
| Pharm GKB Gene | PA128394768 |
| Clinical trial | WASHC2C |
| Miscellaneous |
|---|
| canSAR (ICR) | WASHC2C (select the gene name) |
| Harmonizome | WASHC2C |
| DataMed Index | WASHC2C |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 41 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | WASHC2C |
| EVEX | WASHC2C |
| GoPubMed | WASHC2C |
