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WASHC2C (WASH complex subunit 2C)

Identity

Other aliasFAM21A
FAM21C
VPEF
HGNC (Hugo) WASHC2C
LocusID (NCBI) 253725
Atlas_Id 78794
Location 10q11.22  [Link to chromosome band 10q11]
Location_base_pair Starts at 46222648 and ends at 46288412 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)WASHC2C   23414
Cards
Entrez_Gene (NCBI)WASHC2C  253725  WASH complex subunit 2C
AliasesFAM21A; FAM21C; VPEF
GeneCards (Weizmann)WASHC2C
Ensembl hg19 (Hinxton) [Gene_View]  chr10:46222648-46288412 [Contig_View]  WASHC2C [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:46222648-46288412 [Contig_View]  WASHC2C [Vega]
TCGA cBioPortalWASHC2C
AceView (NCBI)WASHC2C
Genatlas (Paris)WASHC2C
WikiGenes253725
SOURCE (Princeton)WASHC2C
Genetics Home Reference (NIH)WASHC2C
Genomic and cartography
GoldenPath hg19 (UCSC)WASHC2C  -     chr10:46222648-46288412 +  10q11.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WASHC2C  -     10q11.22   [Description]    (hg38-Dec_2013)
EnsemblWASHC2C - 10q11.22 [CytoView hg19]  WASHC2C - 10q11.22 [CytoView hg38]
Mapping of homologs : NCBIWASHC2C [Mapview hg19]  WASHC2C [Mapview hg38]
OMIM613631   
Gene and transcription
Genbank (Entrez)AB011164 AI023041 AI356516 AK001545 AK291430
RefSeq transcript (Entrez)NM_001169106 NM_001169107 NM_001330074 NM_015262
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WASHC2C
Cluster EST : UnigeneHs.449662 [ NCBI ]
CGAP (NCI)Hs.449662
Gene ExpressionWASHC2C [ NCBI-GEO ]   WASHC2C [ EBI - ARRAY_EXPRESS ]   WASHC2C [ SEEK ]   WASHC2C [ MEM ]
Gene Expression Viewer (FireBrowse)WASHC2C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)253725
GTEX Portal (Tissue expression)WASHC2C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y4E1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y4E1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y4E1
Splice isoforms : SwissVarQ9Y4E1
PhosPhoSitePlusQ9Y4E1
Domains : Interpro (EBI)FAM21    FAM21/CAPZIP   
Domain families : Pfam (Sanger)CAP-ZIP_m (PF15255)   
Domain families : Pfam (NCBI)pfam15255   
Conserved Domain (NCBI)WASHC2C
DMDM Disease mutations253725
Blocks (Seattle)WASHC2C
SuperfamilyQ9Y4E1
Peptide AtlasQ9Y4E1
HPRD11094
IPIIPI00514705   IPI00456853   IPI00556261   IPI00954966   IPI01011204   IPI01011198   IPI00954891   IPI00966110   IPI00871172   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y4E1
IntAct (EBI)Q9Y4E1
BioGRIDWASHC2C
STRING (EMBL)WASHC2C
ZODIACWASHC2C
Ontologies - Pathways
QuickGOQ9Y4E1
Ontology : AmiGOprotein binding  phosphatidylinositol-4,5-bisphosphate binding  phosphatidylinositol-3,4,5-trisphosphate binding  nucleolus  cytoplasm  endosome  early endosome  cytosol  plasma membrane  phosphatidylinositol-5-phosphate binding  protein transport  retromer complex  early endosome membrane  phosphatidylinositol-3-phosphate binding  retrograde transport, endosome to Golgi  intracellular membrane-bounded organelle  phosphatidylinositol-3,4-bisphosphate binding  phosphatidylinositol-4-phosphate binding  WASH complex  phosphatidylinositol-3,5-bisphosphate binding  regulation of substrate adhesion-dependent cell spreading  retromer complex binding  retrograde transport, endosome to plasma membrane  negative regulation of barbed-end actin filament capping  
Ontology : EGO-EBIprotein binding  phosphatidylinositol-4,5-bisphosphate binding  phosphatidylinositol-3,4,5-trisphosphate binding  nucleolus  cytoplasm  endosome  early endosome  cytosol  plasma membrane  phosphatidylinositol-5-phosphate binding  protein transport  retromer complex  early endosome membrane  phosphatidylinositol-3-phosphate binding  retrograde transport, endosome to Golgi  intracellular membrane-bounded organelle  phosphatidylinositol-3,4-bisphosphate binding  phosphatidylinositol-4-phosphate binding  WASH complex  phosphatidylinositol-3,5-bisphosphate binding  regulation of substrate adhesion-dependent cell spreading  retromer complex binding  retrograde transport, endosome to plasma membrane  negative regulation of barbed-end actin filament capping  
NDEx NetworkWASHC2C
Atlas of Cancer Signalling NetworkWASHC2C
Wikipedia pathwaysWASHC2C
Orthology - Evolution
OrthoDB253725
Phylogenetic Trees/Animal Genes : TreeFamWASHC2C
HOVERGENQ9Y4E1
HOGENOMQ9Y4E1
Homologs : HomoloGeneWASHC2C
Homology/Alignments : Family Browser (UCSC)WASHC2C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWASHC2C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WASHC2C
dbVarWASHC2C
ClinVarWASHC2C
1000_GenomesWASHC2C 
Exome Variant ServerWASHC2C
ExAC (Exome Aggregation Consortium)WASHC2C (select the gene name)
Genetic variants : HAPMAP253725
Genomic Variants (DGV)WASHC2C [DGVbeta]
DECIPHER (Syndromes)10:46222648-46288412  
CONAN: Copy Number AnalysisWASHC2C 
Mutations
ICGC Data PortalWASHC2C 
TCGA Data PortalWASHC2C 
Broad Tumor PortalWASHC2C
OASIS PortalWASHC2C [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDWASHC2C
BioMutasearch WASHC2C
DgiDB (Drug Gene Interaction Database)WASHC2C
DoCM (Curated mutations)WASHC2C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WASHC2C (select a term)
intoGenWASHC2C
Cancer3DWASHC2C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613631   
Orphanet
MedgenWASHC2C
Genetic Testing Registry WASHC2C
NextProtQ9Y4E1 [Medical]
TSGene253725
GENETestsWASHC2C
Huge Navigator WASHC2C [HugePedia]
snp3D : Map Gene to Disease253725
BioCentury BCIQWASHC2C
ClinGenWASHC2C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD253725
Chemical/Pharm GKB GenePA128394768
Clinical trialWASHC2C
Miscellaneous
canSAR (ICR)WASHC2C (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWASHC2C
EVEXWASHC2C
GoPubMedWASHC2C
iHOPWASHC2C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:51:29 CET 2017

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