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WASHC3 (WASH complex subunit 3)

Identity

Other aliasCCDC53
CGI-116
HGNC (Hugo) WASHC3
LocusID (NCBI) 51019
Atlas_Id 78587
Location 12q23.2  [Link to chromosome band 12q23]
Location_base_pair Starts at 102012840 and ends at 102062124 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WASHC3   24256
Cards
Entrez_Gene (NCBI)WASHC3  51019  WASH complex subunit 3
AliasesCCDC53; CGI-116
GeneCards (Weizmann)WASHC3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:102012840-102062124 [Contig_View]  WASHC3 [Vega]
TCGA cBioPortalWASHC3
AceView (NCBI)WASHC3
Genatlas (Paris)WASHC3
WikiGenes51019
SOURCE (Princeton)WASHC3
Genetics Home Reference (NIH)WASHC3
Genomic and cartography
GoldenPath hg38 (UCSC)WASHC3  -     chr12:102012840-102062124 -  12q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WASHC3  -     12q23.2   [Description]    (hg19-Feb_2009)
EnsemblWASHC3 - 12q23.2 [CytoView hg19]  WASHC3 - 12q23.2 [CytoView hg38]
Mapping of homologs : NCBIWASHC3 [Mapview hg19]  WASHC3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151874 AF155655 AI739611 AK223339 AK314970
RefSeq transcript (Entrez)NM_001301107 NM_016053
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WASHC3
Cluster EST : UnigeneHs.405692 [ NCBI ]
CGAP (NCI)Hs.405692
Gene ExpressionWASHC3 [ NCBI-GEO ]   WASHC3 [ EBI - ARRAY_EXPRESS ]   WASHC3 [ SEEK ]   WASHC3 [ MEM ]
Gene Expression Viewer (FireBrowse)WASHC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51019
GTEX Portal (Tissue expression)WASHC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3C0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3C0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3C0
Splice isoforms : SwissVarQ9Y3C0
PhosPhoSitePlusQ9Y3C0
Domains : Interpro (EBI)WASH_CCDC53   
Domain families : Pfam (Sanger)DUF2360 (PF10152)   
Domain families : Pfam (NCBI)pfam10152   
Conserved Domain (NCBI)WASHC3
DMDM Disease mutations51019
Blocks (Seattle)WASHC3
SuperfamilyQ9Y3C0
Peptide AtlasQ9Y3C0
HPRD13031
IPIIPI00032848   IPI01012974   IPI01012552   IPI01009269   IPI01009855   IPI01010196   IPI01010562   IPI01014413   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3C0
IntAct (EBI)Q9Y3C0
BioGRIDWASHC3
STRING (EMBL)WASHC3
ZODIACWASHC3
Ontologies - Pathways
QuickGOQ9Y3C0
Ontology : AmiGOprotein binding  early endosome  biological_process  protein transport  WASH complex  
Ontology : EGO-EBIprotein binding  early endosome  biological_process  protein transport  WASH complex  
NDEx NetworkWASHC3
Atlas of Cancer Signalling NetworkWASHC3
Wikipedia pathwaysWASHC3
Orthology - Evolution
OrthoDB51019
Phylogenetic Trees/Animal Genes : TreeFamWASHC3
HOVERGENQ9Y3C0
HOGENOMQ9Y3C0
Homologs : HomoloGeneWASHC3
Homology/Alignments : Family Browser (UCSC)WASHC3
Gene fusions - Rearrangements
Tumor Fusion PortalWASHC3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWASHC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WASHC3
dbVarWASHC3
ClinVarWASHC3
1000_GenomesWASHC3 
Exome Variant ServerWASHC3
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP51019
Genomic Variants (DGV)WASHC3 [DGVbeta]
DECIPHERWASHC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWASHC3 
Mutations
ICGC Data PortalWASHC3 
TCGA Data PortalWASHC3 
Broad Tumor PortalWASHC3
OASIS PortalWASHC3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDWASHC3
BioMutasearch WASHC3
DgiDB (Drug Gene Interaction Database)WASHC3
DoCM (Curated mutations)WASHC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WASHC3 (select a term)
intoGenWASHC3
Cancer3DWASHC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETWASHC3
MedgenWASHC3
Genetic Testing Registry WASHC3
NextProtQ9Y3C0 [Medical]
TSGene51019
GENETestsWASHC3
Target ValidationWASHC3
Huge Navigator WASHC3 [HugePedia]
snp3D : Map Gene to Disease51019
BioCentury BCIQWASHC3
ClinGenWASHC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51019
Chemical/Pharm GKB GenePA142672169
Clinical trialWASHC3
Miscellaneous
canSAR (ICR)WASHC3 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWASHC3
EVEXWASHC3
GoPubMedWASHC3
iHOPWASHC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:27:42 CET 2017

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