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WASHC4 (WASH complex subunit 4)

Identity

Other aliasKIAA1033
MRT43
SWIP
HGNC (Hugo) WASHC4
LocusID (NCBI) 23325
Atlas_Id 78782
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 105501492 and ends at 105562912 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)WASHC4   29174
Cards
Entrez_Gene (NCBI)WASHC4  23325  WASH complex subunit 4
AliasesKIAA1033; MRT43; SWIP
GeneCards (Weizmann)WASHC4
Ensembl hg19 (Hinxton) [Gene_View]  chr12:105501492-105562912 [Contig_View]  WASHC4 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:105501492-105562912 [Contig_View]  WASHC4 [Vega]
TCGA cBioPortalWASHC4
AceView (NCBI)WASHC4
Genatlas (Paris)WASHC4
WikiGenes23325
SOURCE (Princeton)WASHC4
Genetics Home Reference (NIH)WASHC4
Genomic and cartography
GoldenPath hg19 (UCSC)WASHC4  -     chr12:105501492-105562912 +  12q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WASHC4  -     12q23.3   [Description]    (hg38-Dec_2013)
EnsemblWASHC4 - 12q23.3 [CytoView hg19]  WASHC4 - 12q23.3 [CytoView hg38]
Mapping of homologs : NCBIWASHC4 [Mapview hg19]  WASHC4 [Mapview hg38]
OMIM615748   615817   
Gene and transcription
Genbank (Entrez)AB028956 AF075010 AI753633 AK001657 AK001728
RefSeq transcript (Entrez)NM_001293640 NM_015275
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WASHC4
Cluster EST : UnigeneHs.12144 [ NCBI ]
CGAP (NCI)Hs.12144
Gene ExpressionWASHC4 [ NCBI-GEO ]   WASHC4 [ EBI - ARRAY_EXPRESS ]   WASHC4 [ SEEK ]   WASHC4 [ MEM ]
Gene Expression Viewer (FireBrowse)WASHC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23325
GTEX Portal (Tissue expression)WASHC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2M389   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2M389  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2M389
Splice isoforms : SwissVarQ2M389
PhosPhoSitePlusQ2M389
Domains : Interpro (EBI)WASH-7_C    WASH-7_central    WASH-7_N    WASH7   
Domain families : Pfam (Sanger)WASH-7_C (PF14746)    WASH-7_mid (PF14744)    WASH-7_N (PF14745)   
Domain families : Pfam (NCBI)pfam14746    pfam14744    pfam14745   
Conserved Domain (NCBI)WASHC4
DMDM Disease mutations23325
Blocks (Seattle)WASHC4
SuperfamilyQ2M389
Peptide AtlasQ2M389
HPRD13829
IPIIPI00164930   IPI00298991   IPI01022176   IPI01025766   IPI01021891   IPI01022968   
Protein Interaction databases
DIP (DOE-UCLA)Q2M389
IntAct (EBI)Q2M389
BioGRIDWASHC4
STRING (EMBL)WASHC4
ZODIACWASHC4
Ontologies - Pathways
QuickGOQ2M389
Ontology : AmiGOnucleoplasm  endosome  early endosome  endosome organization  protein transport  endosomal transport  endosomal transport  BLOC-1 complex  WASH complex  
Ontology : EGO-EBInucleoplasm  endosome  early endosome  endosome organization  protein transport  endosomal transport  endosomal transport  BLOC-1 complex  WASH complex  
NDEx NetworkWASHC4
Atlas of Cancer Signalling NetworkWASHC4
Wikipedia pathwaysWASHC4
Orthology - Evolution
OrthoDB23325
Phylogenetic Trees/Animal Genes : TreeFamWASHC4
HOVERGENQ2M389
HOGENOMQ2M389
Homologs : HomoloGeneWASHC4
Homology/Alignments : Family Browser (UCSC)WASHC4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWASHC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WASHC4
dbVarWASHC4
ClinVarWASHC4
1000_GenomesWASHC4 
Exome Variant ServerWASHC4
ExAC (Exome Aggregation Consortium)WASHC4 (select the gene name)
Genetic variants : HAPMAP23325
Genomic Variants (DGV)WASHC4 [DGVbeta]
DECIPHER (Syndromes)12:105501492-105562912  
CONAN: Copy Number AnalysisWASHC4 
Mutations
ICGC Data PortalWASHC4 
TCGA Data PortalWASHC4 
Broad Tumor PortalWASHC4
OASIS PortalWASHC4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDWASHC4
BioMutasearch WASHC4
DgiDB (Drug Gene Interaction Database)WASHC4
DoCM (Curated mutations)WASHC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WASHC4 (select a term)
intoGenWASHC4
Cancer3DWASHC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615748    615817   
Orphanet
MedgenWASHC4
Genetic Testing Registry WASHC4
NextProtQ2M389 [Medical]
TSGene23325
GENETestsWASHC4
Huge Navigator WASHC4 [HugePedia]
snp3D : Map Gene to Disease23325
BioCentury BCIQWASHC4
ClinGenWASHC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23325
Chemical/Pharm GKB GenePA128394626
Clinical trialWASHC4
Miscellaneous
canSAR (ICR)WASHC4 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWASHC4
EVEXWASHC4
GoPubMedWASHC4
iHOPWASHC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:29 CET 2017

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