Atlas of Genetics and Cytogenetics in Oncology and Haematology

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WASL (Wiskott-Aldrich syndrome-like)

Identity

Other namesN-WASP
NWASP
HGNC (Hugo) WASL
LocusID (NCBI) 8976
Location 7q31.32
Location_base_pair Starts at 123321997 and ends at 123389116 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)WASL   12735
Entrez_Gene (NCBI)WASL  8976  Wiskott-Aldrich syndrome-like
Cards
GeneCards (Weizmann)WASL
Ensembl (Hinxton)ENSG00000106299 [Gene_View]  chr7:123321997-123389116 [Contig_View]  WASL [Vega]
AceView (NCBI)WASL
Genatlas (Paris)WASL
SOURCE (Stanford)NM_003941
Genomic and cartography
GoldenPath (UCSC)WASL  -  7q31.32   chr7:123321997-123389116 -  7q31.32   [Description]    (hg19-Feb_2009)
EnsemblWASL - 7q31.32 [CytoView]
Mapping of homologs : NCBIWASL [Mapview]
OMIM605056   
Gene and transcription
Genbank (Entrez)AK023554 AK131016 AK289795 AM295156 BC013776
RefSeq transcript (SRS)NM_003941
RefSeq transcript (Entrez)NM_003941
RefSeq genomic (SRS)AC_000068 AC_000139 NC_000007 NC_018918 NT_007933 NT_079596 NW_001839071 NW_004078032
RefSeq genomic (Entrez)AC_000068 AC_000139 NC_000007 NC_018918 NT_007933 NT_079596 NW_001839071 NW_004078032
Consensus coding sequences : CCDS (NCBI)WASL
Cluster EST : UnigeneHs.731519 [ SRS ] Hs.731519 [ NCBI ]
CGAP (NCI)Hs.731519
Alternative Splicing : Fast-db (Paris)GSHG0028538
Alternative Splicing GalleryENSG00000106299
Gene ExpressionWASL [ NCBI-GEO ]   WASL [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00401 (SRS) O00401 (Uniprot)
NextProtO00401
With graphics : InterProO00401
Splice isoforms : SwissVarO00401(Swissvar)
Domaine pattern : Prosite (SRS)CRIB (PS50108)    WH1 (PS50229)    WH2 (PS51082)   
Domaine pattern : Prosite (Expaxy)CRIB (PS50108)    WH1 (PS50229)    WH2 (PS51082)   
Domains : Interpro (SRS)EVH1    PAK_box_Rho-bd    PH_like_dom    WASP_C    WH2_dom   
Domains : Interpro (EBI)EVH1    PAK_box_Rho-bd    PH_like_dom    WASP_C    WH2_dom   
Related proteins : CluSTrO00401
Domain families : Pfam (SRS)PBD (PF00786)    WH1 (PF00568)    WH2 (PF02205)   
Domain families : Pfam (Sanger)PBD (PF00786)    WH1 (PF00568)    WH2 (PF02205)   
Domain families : Pfam (NCBI)pfam00786    pfam00568    pfam02205   
Domain families : Smart (EMBL)PBD (SM00285)  WH1 (SM00461)  WH2 (SM00246)  
DMDM8976
Blocks (Seattle)O00401
PDB (SRS)2FF3    2LNH    2VCP   
PDB (PDBSum)2FF3    2LNH    2VCP   
PDB (IMB)2FF3    2LNH    2VCP   
PDB (RSDB)2FF3    2LNH    2VCP   
Human Protein AtlasENSG00000106299
HPRD05448
IPIIPI00011676   IPI01014145   IPI00945907   
Protein Interaction databases
DIP (DOE-UCLA)O00401
IntAct (EBI)O00401
FunCoupENSG00000106299
REACTOMEWASL
Protein Interaction Database8976
BioGRIDWASL
InParanoidO00401
Interologous Interaction database O00401
IntegromeDBWASL
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)WASL
SNP (GeneSNP Utah)WASL
SNP : HGBaseWASL
Genetic variants : HAPMAPWASL
Somatic Mutations in Cancer : COSMICWASL 
CONAN: Copy Number AnalysisWASL 
Mutations and Diseases : HGMDWASL
OMIM605056   
GENETests605056   
Disease Genetic AssociationWASL
Huge Navigator WASL [HugePedia]  WASL [HugeCancerGEM]
Genomic VariantsWASL  WASL [DGVbeta]
snp3D : Map Gene to Disease8976
General knowledge
Homologs : HomoloGeneWASL
Homology/Alignments : Family Browser (UCSC)WASL
Phylogenetic Trees/Animal Genes : TreeFamWASL
Chemical/Protein Interactions : CTD8976
Chemical/Pharm GKB GenePA37346
Clinical trialWASL
Cancer Resource (Charite)ENSG00000106299
Ontology : AmiGOGolgi membrane  actin binding  small GTPase regulator activity  protein binding  nucleus  cytosol  plasma membrane  transcription, DNA-dependent  regulation of transcription, DNA-dependent  protein complex assembly  membrane budding  cellular component movement  axon guidance  actin polymerization or depolymerization  response to bacterium  actin cytoskeleton  cytoplasmic membrane-bounded vesicle  vesicle organization  lamellipodium  vesicle transport along actin filament  actin cap  endocytic vesicle membrane  cellular protein complex localization  small molecule metabolic process  nitric oxide metabolic process  regulation of nitric-oxide synthase activity  positive regulation of filopodium assembly  spindle localization  positive regulation of clathrin-mediated endocytosis  
Ontology : EGO-EBIGolgi membrane  actin binding  small GTPase regulator activity  protein binding  nucleus  cytosol  plasma membrane  transcription, DNA-dependent  regulation of transcription, DNA-dependent  protein complex assembly  membrane budding  cellular component movement  axon guidance  actin polymerization or depolymerization  response to bacterium  actin cytoskeleton  cytoplasmic membrane-bounded vesicle  vesicle organization  lamellipodium  vesicle transport along actin filament  actin cap  endocytic vesicle membrane  cellular protein complex localization  small molecule metabolic process  nitric oxide metabolic process  regulation of nitric-oxide synthase activity  positive regulation of filopodium assembly  spindle localization  positive regulation of clathrin-mediated endocytosis  
Pathways : BIOCARTARole of PI3K subunit p85 in regulation of Actin Organization and Cell Migration [Genes]    Y branching of actin filaments [Genes]    How does salmonella hijack a cell [Genes]   
Pathways : KEGGRegulation of actin cytoskeletonAdherens junction
Other databases
Probes
Litterature
PubMed78 Pubmed reference(s) in Entrez
PubGeneWASL
iHOPWASL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:30:50 CEST 2013
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