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WBP11 (WW domain binding protein 11)

Identity

Alias_symbol (synonym)NPWBP
SIPP1
PPP1R165
Other aliasWBP-11
HGNC (Hugo) WBP11
LocusID (NCBI) 51729
Atlas_Id 75683
Location 12p12.3  [Link to chromosome band 12p12]
Location_base_pair Starts at 14786478 and ends at 14803467 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SVIP (11p14.3) / WBP11 (12p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WBP11   16461
Cards
Entrez_Gene (NCBI)WBP11  51729  WW domain binding protein 11
AliasesNPWBP; PPP1R165; SIPP1; WBP-11
GeneCards (Weizmann)WBP11
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:14786478-14803467 [Contig_View]  WBP11 [Vega]
TCGA cBioPortalWBP11
AceView (NCBI)WBP11
Genatlas (Paris)WBP11
WikiGenes51729
SOURCE (Princeton)WBP11
Genetics Home Reference (NIH)WBP11
Genomic and cartography
GoldenPath hg38 (UCSC)WBP11  -     chr12:14786478-14803467 -  12p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WBP11  -     12p12.3   [Description]    (hg19-Feb_2009)
EnsemblWBP11 - 12p12.3 [CytoView hg19]  WBP11 - 12p12.3 [CytoView hg38]
Mapping of homologs : NCBIWBP11 [Mapview hg19]  WBP11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB029309 AF118023 AK297410 AK302244 BC001621
RefSeq transcript (Entrez)NM_016312
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WBP11
Cluster EST : UnigeneHs.655138 [ NCBI ]
CGAP (NCI)Hs.655138
Gene ExpressionWBP11 [ NCBI-GEO ]   WBP11 [ EBI - ARRAY_EXPRESS ]   WBP11 [ SEEK ]   WBP11 [ MEM ]
Gene Expression Viewer (FireBrowse)WBP11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51729
GTEX Portal (Tissue expression)WBP11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2W2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2W2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2W2
Splice isoforms : SwissVarQ9Y2W2
PhosPhoSitePlusQ9Y2W2
Domains : Interpro (EBI)WW_dom-bd_prot_11   
Domain families : Pfam (Sanger)Wbp11 (PF09429)   
Domain families : Pfam (NCBI)pfam09429   
Conserved Domain (NCBI)WBP11
DMDM Disease mutations51729
Blocks (Seattle)WBP11
SuperfamilyQ9Y2W2
Peptide AtlasQ9Y2W2
HPRD18293
IPIIPI00170786   IPI00910819   IPI01013891   IPI01011025   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2W2
IntAct (EBI)Q9Y2W2
BioGRIDWBP11
STRING (EMBL)WBP11
ZODIACWBP11
Ontologies - Pathways
QuickGOQ9Y2W2
Ontology : AmiGOmRNA splicing, via spliceosome  single-stranded DNA binding  RNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  spliceosomal complex  cytosol  rRNA processing  nuclear speck  protein phosphatase regulator activity  intracellular membrane-bounded organelle  mRNA cis splicing, via spliceosome  WW domain binding  regulation of catalytic activity  regulation of mitophagy  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBImRNA splicing, via spliceosome  single-stranded DNA binding  RNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  spliceosomal complex  cytosol  rRNA processing  nuclear speck  protein phosphatase regulator activity  intracellular membrane-bounded organelle  mRNA cis splicing, via spliceosome  WW domain binding  regulation of catalytic activity  regulation of mitophagy  positive regulation of protein targeting to mitochondrion  
Pathways : KEGGSpliceosome   
NDEx NetworkWBP11
Atlas of Cancer Signalling NetworkWBP11
Wikipedia pathwaysWBP11
Orthology - Evolution
OrthoDB51729
Phylogenetic Trees/Animal Genes : TreeFamWBP11
HOVERGENQ9Y2W2
HOGENOMQ9Y2W2
Homologs : HomoloGeneWBP11
Homology/Alignments : Family Browser (UCSC)WBP11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWBP11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WBP11
dbVarWBP11
ClinVarWBP11
1000_GenomesWBP11 
Exome Variant ServerWBP11
ExAC (Exome Aggregation Consortium)WBP11 (select the gene name)
Genetic variants : HAPMAP51729
Genomic Variants (DGV)WBP11 [DGVbeta]
DECIPHERWBP11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWBP11 
Mutations
ICGC Data PortalWBP11 
TCGA Data PortalWBP11 
Broad Tumor PortalWBP11
OASIS PortalWBP11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWBP11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWBP11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WBP11
DgiDB (Drug Gene Interaction Database)WBP11
DoCM (Curated mutations)WBP11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WBP11 (select a term)
intoGenWBP11
Cancer3DWBP11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWBP11
Genetic Testing Registry WBP11
NextProtQ9Y2W2 [Medical]
TSGene51729
GENETestsWBP11
Target ValidationWBP11
Huge Navigator WBP11 [HugePedia]
snp3D : Map Gene to Disease51729
BioCentury BCIQWBP11
ClinGenWBP11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51729
Chemical/Pharm GKB GenePA38144
Clinical trialWBP11
Miscellaneous
canSAR (ICR)WBP11 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWBP11
EVEXWBP11
GoPubMedWBP11
iHOPWBP11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:48:51 CEST 2017

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