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WBP1L (WW domain binding protein 1 like)

Identity

Alias_namesC10orf26
chromosome 10 open reading frame 26
Alias_symbol (synonym)FLJ20154
OPAL1
Other aliasOPA1L
HGNC (Hugo) WBP1L
LocusID (NCBI) 54838
Atlas_Id 75685
Location 10q24.32  [Link to chromosome band 10q24]
Location_base_pair Starts at 102743970 and ends at 102816264 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
WBP1L (10q24.32) / ADAMTS2 (5q35.3)WBP1L (10q24.32) / ADTRP (6p24.1)WBP1L (10q24.32) / ARL3 (10q24.32)
WBP1L (10q24.32) / SUFU (10q24.32)WBP1L (10q24.32) / TRIM8 (10q24.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WBP1L   23510
Cards
Entrez_Gene (NCBI)WBP1L  54838  WW domain binding protein 1 like
AliasesC10orf26; OPA1L; OPAL1
GeneCards (Weizmann)WBP1L
Ensembl hg19 (Hinxton)ENSG00000166272 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166272 [Gene_View]  chr10:102743970-102816264 [Contig_View]  WBP1L [Vega]
ICGC DataPortalENSG00000166272
TCGA cBioPortalWBP1L
AceView (NCBI)WBP1L
Genatlas (Paris)WBP1L
WikiGenes54838
SOURCE (Princeton)WBP1L
Genetics Home Reference (NIH)WBP1L
Genomic and cartography
GoldenPath hg38 (UCSC)WBP1L  -     chr10:102743970-102816264 +  10q24.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WBP1L  -     10q24.32   [Description]    (hg19-Feb_2009)
EnsemblWBP1L - 10q24.32 [CytoView hg19]  WBP1L - 10q24.32 [CytoView hg38]
Mapping of homologs : NCBIWBP1L [Mapview hg19]  WBP1L [Mapview hg38]
OMIM611129   
Gene and transcription
Genbank (Entrez)AF070644 AK000161 AK000374 AK056285 AK300871
RefSeq transcript (Entrez)NM_001083913 NM_017787
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WBP1L
Cluster EST : UnigeneHs.707763 [ NCBI ]
CGAP (NCI)Hs.707763
Alternative Splicing GalleryENSG00000166272
Gene ExpressionWBP1L [ NCBI-GEO ]   WBP1L [ EBI - ARRAY_EXPRESS ]   WBP1L [ SEEK ]   WBP1L [ MEM ]
Gene Expression Viewer (FireBrowse)WBP1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54838
GTEX Portal (Tissue expression)WBP1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX94   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX94  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX94
Splice isoforms : SwissVarQ9NX94
PhosPhoSitePlusQ9NX94
Domains : Interpro (EBI)WBP1-like   
Domain families : Pfam (Sanger)WBP-1 (PF11669)   
Domain families : Pfam (NCBI)pfam11669   
Conserved Domain (NCBI)WBP1L
DMDM Disease mutations54838
Blocks (Seattle)WBP1L
SuperfamilyQ9NX94
Human Protein AtlasENSG00000166272
Peptide AtlasQ9NX94
HPRD12567
IPIIPI00015758   IPI00815634   IPI00815822   IPI00816177   IPI00020577   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX94
IntAct (EBI)Q9NX94
FunCoupENSG00000166272
BioGRIDWBP1L
STRING (EMBL)WBP1L
ZODIACWBP1L
Ontologies - Pathways
QuickGOQ9NX94
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkWBP1L
Atlas of Cancer Signalling NetworkWBP1L
Wikipedia pathwaysWBP1L
Orthology - Evolution
OrthoDB54838
GeneTree (enSembl)ENSG00000166272
Phylogenetic Trees/Animal Genes : TreeFamWBP1L
HOVERGENQ9NX94
HOGENOMQ9NX94
Homologs : HomoloGeneWBP1L
Homology/Alignments : Family Browser (UCSC)WBP1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWBP1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WBP1L
dbVarWBP1L
ClinVarWBP1L
1000_GenomesWBP1L 
Exome Variant ServerWBP1L
ExAC (Exome Aggregation Consortium)WBP1L (select the gene name)
Genetic variants : HAPMAP54838
Genomic Variants (DGV)WBP1L [DGVbeta]
DECIPHERWBP1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWBP1L 
Mutations
ICGC Data PortalWBP1L 
TCGA Data PortalWBP1L 
Broad Tumor PortalWBP1L
OASIS PortalWBP1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWBP1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWBP1L
BioMutasearch WBP1L
DgiDB (Drug Gene Interaction Database)WBP1L
DoCM (Curated mutations)WBP1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WBP1L (select a term)
intoGenWBP1L
Cancer3DWBP1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611129   
Orphanet
MedgenWBP1L
Genetic Testing Registry WBP1L
NextProtQ9NX94 [Medical]
TSGene54838
GENETestsWBP1L
Target ValidationWBP1L
Huge Navigator WBP1L [HugePedia]
snp3D : Map Gene to Disease54838
BioCentury BCIQWBP1L
ClinGenWBP1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54838
Chemical/Pharm GKB GenePA128394674
Clinical trialWBP1L
Miscellaneous
canSAR (ICR)WBP1L (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWBP1L
EVEXWBP1L
GoPubMedWBP1L
iHOPWBP1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:48:51 CEST 2017

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