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WBP4 (WW domain binding protein 4)

Identity

Alias_symbol (synonym)FBP21
MGC117310
Other alias
HGNC (Hugo) WBP4
LocusID (NCBI) 11193
Atlas_Id 75688
Location 13q14.11  [Link to chromosome band 13q14]
Location_base_pair Starts at 41061257 and ends at 41084011 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
WBP4 (13q14.11) / FANK1 (10q26.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WBP4   12739
Cards
Entrez_Gene (NCBI)WBP4  11193  WW domain binding protein 4
AliasesFBP21
GeneCards (Weizmann)WBP4
Ensembl hg19 (Hinxton)ENSG00000120688 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120688 [Gene_View]  chr13:41061257-41084011 [Contig_View]  WBP4 [Vega]
ICGC DataPortalENSG00000120688
TCGA cBioPortalWBP4
AceView (NCBI)WBP4
Genatlas (Paris)WBP4
WikiGenes11193
SOURCE (Princeton)WBP4
Genetics Home Reference (NIH)WBP4
Genomic and cartography
GoldenPath hg38 (UCSC)WBP4  -     chr13:41061257-41084011 +  13q14.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WBP4  -     13q14.11   [Description]    (hg19-Feb_2009)
EnsemblWBP4 - 13q14.11 [CytoView hg19]  WBP4 - 13q14.11 [CytoView hg38]
Mapping of homologs : NCBIWBP4 [Mapview hg19]  WBP4 [Mapview hg38]
OMIM604981   
Gene and transcription
Genbank (Entrez)AF071185 AK000979 AK001557 AK297536 AK314525
RefSeq transcript (Entrez)NM_007187
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WBP4
Cluster EST : UnigeneHs.411300 [ NCBI ]
CGAP (NCI)Hs.411300
Alternative Splicing GalleryENSG00000120688
Gene ExpressionWBP4 [ NCBI-GEO ]   WBP4 [ EBI - ARRAY_EXPRESS ]   WBP4 [ SEEK ]   WBP4 [ MEM ]
Gene Expression Viewer (FireBrowse)WBP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11193
GTEX Portal (Tissue expression)WBP4
Human Protein AtlasENSG00000120688-WBP4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75554   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75554  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75554
Splice isoforms : SwissVarO75554
PhosPhoSitePlusO75554
Domaine pattern : Prosite (Expaxy)WW_DOMAIN_1 (PS01159)    WW_DOMAIN_2 (PS50020)    ZF_MATRIN (PS50171)   
Domains : Interpro (EBI)WW_dom    Znf_C2H2_matrin    Znf_U1    Znf_U1-C   
Domain families : Pfam (Sanger)WW (PF00397)    zf-U1 (PF06220)   
Domain families : Pfam (NCBI)pfam00397    pfam06220   
Domain families : Smart (EMBL)WW (SM00456)  ZnF_U1 (SM00451)  
Conserved Domain (NCBI)WBP4
DMDM Disease mutations11193
Blocks (Seattle)WBP4
PDB (SRS)2DK1    2JXW   
PDB (PDBSum)2DK1    2JXW   
PDB (IMB)2DK1    2JXW   
PDB (RSDB)2DK1    2JXW   
Structural Biology KnowledgeBase2DK1    2JXW   
SCOP (Structural Classification of Proteins)2DK1    2JXW   
CATH (Classification of proteins structures)2DK1    2JXW   
SuperfamilyO75554
Human Protein Atlas [tissue]ENSG00000120688-WBP4 [tissue]
Peptide AtlasO75554
HPRD16086
IPIIPI00026957   IPI00922785   
Protein Interaction databases
DIP (DOE-UCLA)O75554
IntAct (EBI)O75554
FunCoupENSG00000120688
BioGRIDWBP4
STRING (EMBL)WBP4
ZODIACWBP4
Ontologies - Pathways
QuickGOO75554
Ontology : AmiGOmRNA splicing, via spliceosome  nucleic acid binding  protein binding  nucleoplasm  spliceosomal complex  zinc ion binding  nuclear speck  mRNA cis splicing, via spliceosome  proline-rich region binding  
Ontology : EGO-EBImRNA splicing, via spliceosome  nucleic acid binding  protein binding  nucleoplasm  spliceosomal complex  zinc ion binding  nuclear speck  mRNA cis splicing, via spliceosome  proline-rich region binding  
NDEx NetworkWBP4
Atlas of Cancer Signalling NetworkWBP4
Wikipedia pathwaysWBP4
Orthology - Evolution
OrthoDB11193
GeneTree (enSembl)ENSG00000120688
Phylogenetic Trees/Animal Genes : TreeFamWBP4
HOVERGENO75554
HOGENOMO75554
Homologs : HomoloGeneWBP4
Homology/Alignments : Family Browser (UCSC)WBP4
Gene fusions - Rearrangements
Tumor Fusion PortalWBP4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWBP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WBP4
dbVarWBP4
ClinVarWBP4
1000_GenomesWBP4 
Exome Variant ServerWBP4
ExAC (Exome Aggregation Consortium)ENSG00000120688
GNOMAD BrowserENSG00000120688
Genetic variants : HAPMAP11193
Genomic Variants (DGV)WBP4 [DGVbeta]
DECIPHERWBP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWBP4 
Mutations
ICGC Data PortalWBP4 
TCGA Data PortalWBP4 
Broad Tumor PortalWBP4
OASIS PortalWBP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWBP4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWBP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WBP4
DgiDB (Drug Gene Interaction Database)WBP4
DoCM (Curated mutations)WBP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WBP4 (select a term)
intoGenWBP4
Cancer3DWBP4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604981   
Orphanet
DisGeNETWBP4
MedgenWBP4
Genetic Testing Registry WBP4
NextProtO75554 [Medical]
TSGene11193
GENETestsWBP4
Target ValidationWBP4
Huge Navigator WBP4 [HugePedia]
snp3D : Map Gene to Disease11193
BioCentury BCIQWBP4
ClinGenWBP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11193
Chemical/Pharm GKB GenePA37350
Clinical trialWBP4
Miscellaneous
canSAR (ICR)WBP4 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWBP4
EVEXWBP4
GoPubMedWBP4
iHOPWBP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:29:08 CET 2017

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