Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

WBSCR16 (Williams-Beuren syndrome chromosome region 16)

Identity

Other alias-
HGNC (Hugo) WBSCR16
LocusID (NCBI) 81554
Atlas_Id 75690
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 74470622 and ends at 74489717 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ADCY2 (5p15.31) / WBSCR16 (7q11.23)WBSCR16 (7q11.23) / WBSCR16 (7q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WBSCR16   14948
Cards
Entrez_Gene (NCBI)WBSCR16  81554  Williams-Beuren syndrome chromosome region 16
Aliases
GeneCards (Weizmann)WBSCR16
Ensembl hg19 (Hinxton)ENSG00000274523 [Gene_View]  chr7:74470622-74489717 [Contig_View]  WBSCR16 [Vega]
Ensembl hg38 (Hinxton)ENSG00000274523 [Gene_View]  chr7:74470622-74489717 [Contig_View]  WBSCR16 [Vega]
ICGC DataPortalENSG00000274523
TCGA cBioPortalWBSCR16
AceView (NCBI)WBSCR16
Genatlas (Paris)WBSCR16
WikiGenes81554
SOURCE (Princeton)WBSCR16
Genetics Home Reference (NIH)WBSCR16
Genomic and cartography
GoldenPath hg19 (UCSC)WBSCR16  -     chr7:74470622-74489717 -  7q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WBSCR16  -     7q11.23   [Description]    (hg38-Dec_2013)
EnsemblWBSCR16 - 7q11.23 [CytoView hg19]  WBSCR16 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBIWBSCR16 [Mapview hg19]  WBSCR16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF410455 AI701939 AK057870 AK309117 AL136804
RefSeq transcript (Entrez)NM_001281441 NM_030798 NM_148842
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)WBSCR16
Cluster EST : UnigeneHs.723684 [ NCBI ]
CGAP (NCI)Hs.723684
Alternative Splicing GalleryENSG00000274523
Gene ExpressionWBSCR16 [ NCBI-GEO ]   WBSCR16 [ EBI - ARRAY_EXPRESS ]   WBSCR16 [ SEEK ]   WBSCR16 [ MEM ]
Gene Expression Viewer (FireBrowse)WBSCR16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81554
GTEX Portal (Tissue expression)WBSCR16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96I51   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96I51  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96I51
Splice isoforms : SwissVarQ96I51
PhosPhoSitePlusQ96I51
Domaine pattern : Prosite (Expaxy)RCC1_2 (PS00626)    RCC1_3 (PS50012)   
Domains : Interpro (EBI)RCC1/BLIP-II    Reg_chr_condens   
Domain families : Pfam (Sanger)RCC1 (PF00415)   
Domain families : Pfam (NCBI)pfam00415   
Conserved Domain (NCBI)WBSCR16
DMDM Disease mutations81554
Blocks (Seattle)WBSCR16
SuperfamilyQ96I51
Human Protein AtlasENSG00000274523
Peptide AtlasQ96I51
HPRD15654
IPIIPI00305992   IPI01018686   IPI01010788   IPI00926597   
Protein Interaction databases
DIP (DOE-UCLA)Q96I51
IntAct (EBI)Q96I51
FunCoupENSG00000274523
BioGRIDWBSCR16
STRING (EMBL)WBSCR16
ZODIACWBSCR16
Ontologies - Pathways
QuickGOQ96I51
Ontology : AmiGOcellular_component  mitochondrion  biological_process  poly(A) RNA binding  
Ontology : EGO-EBIcellular_component  mitochondrion  biological_process  poly(A) RNA binding  
NDEx NetworkWBSCR16
Atlas of Cancer Signalling NetworkWBSCR16
Wikipedia pathwaysWBSCR16
Orthology - Evolution
OrthoDB81554
GeneTree (enSembl)ENSG00000274523
Phylogenetic Trees/Animal Genes : TreeFamWBSCR16
HOVERGENQ96I51
HOGENOMQ96I51
Homologs : HomoloGeneWBSCR16
Homology/Alignments : Family Browser (UCSC)WBSCR16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWBSCR16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WBSCR16
dbVarWBSCR16
ClinVarWBSCR16
1000_GenomesWBSCR16 
Exome Variant ServerWBSCR16
ExAC (Exome Aggregation Consortium)WBSCR16 (select the gene name)
Genetic variants : HAPMAP81554
Genomic Variants (DGV)WBSCR16 [DGVbeta]
DECIPHER (Syndromes)7:74470622-74489717  ENSG00000274523
CONAN: Copy Number AnalysisWBSCR16 
Mutations
ICGC Data PortalWBSCR16 
TCGA Data PortalWBSCR16 
Broad Tumor PortalWBSCR16
OASIS PortalWBSCR16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWBSCR16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWBSCR16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch WBSCR16
DgiDB (Drug Gene Interaction Database)WBSCR16
DoCM (Curated mutations)WBSCR16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WBSCR16 (select a term)
intoGenWBSCR16
Cancer3DWBSCR16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWBSCR16
Genetic Testing Registry WBSCR16
NextProtQ96I51 [Medical]
TSGene81554
GENETestsWBSCR16
Huge Navigator WBSCR16 [HugePedia]
snp3D : Map Gene to Disease81554
BioCentury BCIQWBSCR16
ClinGenWBSCR16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81554
Chemical/Pharm GKB GenePA37941
Clinical trialWBSCR16
Miscellaneous
canSAR (ICR)WBSCR16 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWBSCR16
EVEXWBSCR16
GoPubMedWBSCR16
iHOPWBSCR16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:51:32 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.