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WDHD1 (WD repeat and HMG-box DNA binding protein 1)

Identity

Alias (NCBI)AND-1
AND1
CHTF4
CTF4
HGNC (Hugo) WDHD1
HGNC Alias symbAND-1
CTF4
CHTF4
HGNC Alias nameCTF4, chromosome transmission fidelity factor 4 homolog (S. cerevisiae)
LocusID (NCBI) 11169
Atlas_Id 56704
Location 14q22.2  [Link to chromosome band 14q22]
Location_base_pair Starts at 54938949 and ends at 55027099 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CGRRF1 (14q22.2) / WDHD1 (14q22.2)WDHD1 (14q22.2) / WDHD1 (14q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)WDHD1   23170
Cards
Entrez_Gene (NCBI)WDHD1    WD repeat and HMG-box DNA binding protein 1
AliasesAND-1; AND1; CHTF4; CTF4
GeneCards (Weizmann)WDHD1
Ensembl hg19 (Hinxton)ENSG00000198554 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198554 [Gene_View]  ENSG00000198554 [Sequence]  chr14:54938949-55027099 [Contig_View]  WDHD1 [Vega]
ICGC DataPortalENSG00000198554
TCGA cBioPortalWDHD1
AceView (NCBI)WDHD1
Genatlas (Paris)WDHD1
SOURCE (Princeton)WDHD1
Genetics Home Reference (NIH)WDHD1
Genomic and cartography
GoldenPath hg38 (UCSC)WDHD1  -     chr14:54938949-55027099 -  14q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDHD1  -     14q22.2   [Description]    (hg19-Feb_2009)
GoldenPathWDHD1 - 14q22.2 [CytoView hg19]  WDHD1 - 14q22.2 [CytoView hg38]
ImmunoBaseENSG00000198554
Genome Data Viewer NCBIWDHD1 [Mapview hg19]  
OMIM608126   
Gene and transcription
Genbank (Entrez)AJ006266 AK001538 AK001585 AK001620 AK293005
RefSeq transcript (Entrez)NM_001008396 NM_007086
Consensus coding sequences : CCDS (NCBI)WDHD1
Gene ExpressionWDHD1 [ NCBI-GEO ]   WDHD1 [ EBI - ARRAY_EXPRESS ]   WDHD1 [ SEEK ]   WDHD1 [ MEM ]
Gene Expression Viewer (FireBrowse)WDHD1 [ Firebrowse - Broad ]
GenevisibleExpression of WDHD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11169
GTEX Portal (Tissue expression)WDHD1
Human Protein AtlasENSG00000198554-WDHD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75717   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75717  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75717
PhosPhoSitePlusO75717
Domaine pattern : Prosite (Expaxy)HMG_BOX_2 (PS50118)    WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)Apc4_WD40_dom    HMG_box_dom    HMG_box_dom_sf    Mcl1_mid    WD40/YVTN_repeat-like_dom_sf    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom    WD40_repeat_dom_sf   
Domain families : Pfam (Sanger)ANAPC4_WD40 (PF12894)    Mcl1_mid (PF12341)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam12894    pfam12341    pfam00400   
Domain families : Smart (EMBL)HMG (SM00398)  WD40 (SM00320)  
Conserved Domain (NCBI)WDHD1
PDB (RSDB)2D7L    5GVA    5GVB    5OGS    6XTY   
PDB Europe2D7L    5GVA    5GVB    5OGS    6XTY   
PDB (PDBSum)2D7L    5GVA    5GVB    5OGS    6XTY   
PDB (IMB)2D7L    5GVA    5GVB    5OGS    6XTY   
Structural Biology KnowledgeBase2D7L    5GVA    5GVB    5OGS    6XTY   
SCOP (Structural Classification of Proteins)2D7L    5GVA    5GVB    5OGS    6XTY   
CATH (Classification of proteins structures)2D7L    5GVA    5GVB    5OGS    6XTY   
SuperfamilyO75717
AlphaFold pdb e-kbO75717   
Human Protein Atlas [tissue]ENSG00000198554-WDHD1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)O75717
IntAct (EBI)O75717
BioGRIDWDHD1
STRING (EMBL)WDHD1
ZODIACWDHD1
Ontologies - Pathways
QuickGOO75717
Ontology : AmiGOmitotic cell cycle  DNA binding  chromatin binding  protein binding  nucleoplasm  cytoplasm  DNA-dependent DNA replication  DNA repair  nuclear replication fork  
Ontology : EGO-EBImitotic cell cycle  DNA binding  chromatin binding  protein binding  nucleoplasm  cytoplasm  DNA-dependent DNA replication  DNA repair  nuclear replication fork  
NDEx NetworkWDHD1
Atlas of Cancer Signalling NetworkWDHD1
Wikipedia pathwaysWDHD1
Orthology - Evolution
OrthoDB11169
GeneTree (enSembl)ENSG00000198554
Phylogenetic Trees/Animal Genes : TreeFamWDHD1
Homologs : HomoloGeneWDHD1
Homology/Alignments : Family Browser (UCSC)WDHD1
Gene fusions - Rearrangements
Fusion : QuiverWDHD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDHD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDHD1
dbVarWDHD1
ClinVarWDHD1
MonarchWDHD1
1000_GenomesWDHD1 
Exome Variant ServerWDHD1
GNOMAD BrowserENSG00000198554
Varsome BrowserWDHD1
ACMGWDHD1 variants
VarityO75717
Genomic Variants (DGV)WDHD1 [DGVbeta]
DECIPHERWDHD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDHD1 
Mutations
ICGC Data PortalWDHD1 
TCGA Data PortalWDHD1 
Broad Tumor PortalWDHD1
OASIS PortalWDHD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDHD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DWDHD1
Mutations and Diseases : HGMDWDHD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaWDHD1
DgiDB (Drug Gene Interaction Database)WDHD1
DoCM (Curated mutations)WDHD1
CIViC (Clinical Interpretations of Variants in Cancer)WDHD1
Cancer3DWDHD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608126   
Orphanet
DisGeNETWDHD1
MedgenWDHD1
Genetic Testing Registry WDHD1
NextProtO75717 [Medical]
GENETestsWDHD1
Target ValidationWDHD1
Huge Navigator WDHD1 [HugePedia]
ClinGenWDHD1
Clinical trials, drugs, therapy
MyCancerGenomeWDHD1
Protein Interactions : CTDWDHD1
Pharm GKB GenePA134988782
PharosO75717
Clinical trialWDHD1
Miscellaneous
canSAR (ICR)WDHD1
HarmonizomeWDHD1
DataMed IndexWDHD1
Probes
Litterature
PubMed68 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXWDHD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:38:15 CEST 2021

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