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WDHD1 (WD repeat and HMG-box DNA binding protein 1)

Identity

Other aliasAND-1
AND1
CHTF4
CTF4
HGNC (Hugo) WDHD1
LocusID (NCBI) 11169
Atlas_Id 56704
Location 14q22.2  [Link to chromosome band 14q22]
Location_base_pair Starts at 54938938 and ends at 55027101 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CGRRF1 (14q22.2) / WDHD1 (14q22.2)WDHD1 (14q22.2) / WDHD1 (14q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDHD1   23170
Cards
Entrez_Gene (NCBI)WDHD1  11169  WD repeat and HMG-box DNA binding protein 1
AliasesAND-1; AND1; CHTF4; CTF4
GeneCards (Weizmann)WDHD1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:54938938-55027101 [Contig_View]  WDHD1 [Vega]
TCGA cBioPortalWDHD1
AceView (NCBI)WDHD1
Genatlas (Paris)WDHD1
WikiGenes11169
SOURCE (Princeton)WDHD1
Genetics Home Reference (NIH)WDHD1
Genomic and cartography
GoldenPath hg38 (UCSC)WDHD1  -     chr14:54938938-55027101 -  14q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDHD1  -     14q22.2   [Description]    (hg19-Feb_2009)
EnsemblWDHD1 - 14q22.2 [CytoView hg19]  WDHD1 - 14q22.2 [CytoView hg38]
Mapping of homologs : NCBIWDHD1 [Mapview hg19]  WDHD1 [Mapview hg38]
OMIM608126   
Gene and transcription
Genbank (Entrez)AJ006266 AK001538 AK001585 AK001620 AK293005
RefSeq transcript (Entrez)NM_001008396 NM_007086
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDHD1
Cluster EST : UnigeneHs.385998 [ NCBI ]
CGAP (NCI)Hs.385998
Gene ExpressionWDHD1 [ NCBI-GEO ]   WDHD1 [ EBI - ARRAY_EXPRESS ]   WDHD1 [ SEEK ]   WDHD1 [ MEM ]
Gene Expression Viewer (FireBrowse)WDHD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11169
GTEX Portal (Tissue expression)WDHD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75717   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75717  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75717
Splice isoforms : SwissVarO75717
PhosPhoSitePlusO75717
Domaine pattern : Prosite (Expaxy)HMG_BOX_2 (PS50118)    WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)Apc4_WD40_dom    HMG_box_dom    Mcl1_mid    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)ANAPC4_WD40 (PF12894)    Mcl1_mid (PF12341)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam12894    pfam12341    pfam00400   
Domain families : Smart (EMBL)HMG (SM00398)  WD40 (SM00320)  
Conserved Domain (NCBI)WDHD1
DMDM Disease mutations11169
Blocks (Seattle)WDHD1
PDB (SRS)2D7L   
PDB (PDBSum)2D7L   
PDB (IMB)2D7L   
PDB (RSDB)2D7L   
Structural Biology KnowledgeBase2D7L   
SCOP (Structural Classification of Proteins)2D7L   
CATH (Classification of proteins structures)2D7L   
SuperfamilyO75717
Peptide AtlasO75717
IPIIPI00411614   IPI01014585   IPI00816096   IPI00513835   IPI00879598   
Protein Interaction databases
DIP (DOE-UCLA)O75717
IntAct (EBI)O75717
BioGRIDWDHD1
STRING (EMBL)WDHD1
ZODIACWDHD1
Ontologies - Pathways
QuickGOO75717
Ontology : AmiGODNA binding  protein binding  nucleoplasm  cytoplasm  
Ontology : EGO-EBIDNA binding  protein binding  nucleoplasm  cytoplasm  
NDEx NetworkWDHD1
Atlas of Cancer Signalling NetworkWDHD1
Wikipedia pathwaysWDHD1
Orthology - Evolution
OrthoDB11169
Phylogenetic Trees/Animal Genes : TreeFamWDHD1
HOVERGENO75717
HOGENOMO75717
Homologs : HomoloGeneWDHD1
Homology/Alignments : Family Browser (UCSC)WDHD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDHD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDHD1
dbVarWDHD1
ClinVarWDHD1
1000_GenomesWDHD1 
Exome Variant ServerWDHD1
ExAC (Exome Aggregation Consortium)WDHD1 (select the gene name)
Genetic variants : HAPMAP11169
Genomic Variants (DGV)WDHD1 [DGVbeta]
DECIPHERWDHD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDHD1 
Mutations
ICGC Data PortalWDHD1 
TCGA Data PortalWDHD1 
Broad Tumor PortalWDHD1
OASIS PortalWDHD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDHD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDHD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDHD1
DgiDB (Drug Gene Interaction Database)WDHD1
DoCM (Curated mutations)WDHD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDHD1 (select a term)
intoGenWDHD1
Cancer3DWDHD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608126   
Orphanet
MedgenWDHD1
Genetic Testing Registry WDHD1
NextProtO75717 [Medical]
TSGene11169
GENETestsWDHD1
Target ValidationWDHD1
Huge Navigator WDHD1 [HugePedia]
snp3D : Map Gene to Disease11169
BioCentury BCIQWDHD1
ClinGenWDHD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11169
Chemical/Pharm GKB GenePA134988782
Clinical trialWDHD1
Miscellaneous
canSAR (ICR)WDHD1 (select the gene name)
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDHD1
EVEXWDHD1
GoPubMedWDHD1
iHOPWDHD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:02:44 CEST 2017

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