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WDR13 (WD repeat domain 13)

Identity

Other aliasMG21
HGNC (Hugo) WDR13
LocusID (NCBI) 64743
Atlas_Id 56510
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 48597809 and ends at 48605194 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
WDR13 (Xp11.23) / TMEM201 (1p36.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR13   14352
Cards
Entrez_Gene (NCBI)WDR13  64743  WD repeat domain 13
AliasesMG21
GeneCards (Weizmann)WDR13
Ensembl hg19 (Hinxton)ENSG00000101940 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101940 [Gene_View]  chrX:48597809-48605194 [Contig_View]  WDR13 [Vega]
ICGC DataPortalENSG00000101940
TCGA cBioPortalWDR13
AceView (NCBI)WDR13
Genatlas (Paris)WDR13
WikiGenes64743
SOURCE (Princeton)WDR13
Genetics Home Reference (NIH)WDR13
Genomic and cartography
GoldenPath hg38 (UCSC)WDR13  -     chrX:48597809-48605194 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR13  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblWDR13 - Xp11.23 [CytoView hg19]  WDR13 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIWDR13 [Mapview hg19]  WDR13 [Mapview hg38]
OMIM300512   
Gene and transcription
Genbank (Entrez)AA074569 AF158978 AF329819 AK000570 AK225542
RefSeq transcript (Entrez)NM_001166426 NM_001347217 NM_001347219 NM_017883
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR13
Cluster EST : UnigeneHs.735778 [ NCBI ]
CGAP (NCI)Hs.735778
Alternative Splicing GalleryENSG00000101940
Gene ExpressionWDR13 [ NCBI-GEO ]   WDR13 [ EBI - ARRAY_EXPRESS ]   WDR13 [ SEEK ]   WDR13 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64743
GTEX Portal (Tissue expression)WDR13
Human Protein AtlasENSG00000101940-WDR13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1Z4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1Z4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1Z4
Splice isoforms : SwissVarQ9H1Z4
PhosPhoSitePlusQ9H1Z4
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR13
DMDM Disease mutations64743
Blocks (Seattle)WDR13
SuperfamilyQ9H1Z4
Human Protein Atlas [tissue]ENSG00000101940-WDR13 [tissue]
Peptide AtlasQ9H1Z4
HPRD06753
IPIIPI00016988   IPI00000818   IPI00952949   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1Z4
IntAct (EBI)Q9H1Z4
FunCoupENSG00000101940
BioGRIDWDR13
STRING (EMBL)WDR13
ZODIACWDR13
Ontologies - Pathways
QuickGOQ9H1Z4
Ontology : AmiGOnucleoplasm  microtubule organizing center  plasma membrane  negative regulation of type B pancreatic cell proliferation  promoter-specific chromatin binding  
Ontology : EGO-EBInucleoplasm  microtubule organizing center  plasma membrane  negative regulation of type B pancreatic cell proliferation  promoter-specific chromatin binding  
NDEx NetworkWDR13
Atlas of Cancer Signalling NetworkWDR13
Wikipedia pathwaysWDR13
Orthology - Evolution
OrthoDB64743
GeneTree (enSembl)ENSG00000101940
Phylogenetic Trees/Animal Genes : TreeFamWDR13
HOVERGENQ9H1Z4
HOGENOMQ9H1Z4
Homologs : HomoloGeneWDR13
Homology/Alignments : Family Browser (UCSC)WDR13
Gene fusions - Rearrangements
Fusion: Tumor Portal WDR13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR13
dbVarWDR13
ClinVarWDR13
1000_GenomesWDR13 
Exome Variant ServerWDR13
ExAC (Exome Aggregation Consortium)ENSG00000101940
GNOMAD BrowserENSG00000101940
Genetic variants : HAPMAP64743
Genomic Variants (DGV)WDR13 [DGVbeta]
DECIPHERWDR13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR13 
Mutations
ICGC Data PortalWDR13 
TCGA Data PortalWDR13 
Broad Tumor PortalWDR13
OASIS PortalWDR13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch WDR13
DgiDB (Drug Gene Interaction Database)WDR13
DoCM (Curated mutations)WDR13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR13 (select a term)
intoGenWDR13
Cancer3DWDR13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300512   
Orphanet
MedgenWDR13
Genetic Testing Registry WDR13
NextProtQ9H1Z4 [Medical]
TSGene64743
GENETestsWDR13
Target ValidationWDR13
Huge Navigator WDR13 [HugePedia]
snp3D : Map Gene to Disease64743
BioCentury BCIQWDR13
ClinGenWDR13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64743
Chemical/Pharm GKB GenePA37876
Clinical trialWDR13
Miscellaneous
canSAR (ICR)WDR13 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR13
EVEXWDR13
GoPubMedWDR13
iHOPWDR13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:17:25 CET 2017

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