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WDR17 (WD repeat domain 17)

Identity

Other alias-
HGNC (Hugo) WDR17
LocusID (NCBI) 116966
Atlas_Id 75702
Location 4q34.2  [Link to chromosome band 4q34]
Location_base_pair Starts at 176986985 and ends at 177103979 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
WDR17 (4q34.2) / LTA4H (12q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR17   16661
Cards
Entrez_Gene (NCBI)WDR17  116966  WD repeat domain 17
Aliases
GeneCards (Weizmann)WDR17
Ensembl hg19 (Hinxton)ENSG00000150627 [Gene_View]  chr4:176986985-177103979 [Contig_View]  WDR17 [Vega]
Ensembl hg38 (Hinxton)ENSG00000150627 [Gene_View]  chr4:176986985-177103979 [Contig_View]  WDR17 [Vega]
ICGC DataPortalENSG00000150627
TCGA cBioPortalWDR17
AceView (NCBI)WDR17
Genatlas (Paris)WDR17
WikiGenes116966
SOURCE (Princeton)WDR17
Genetics Home Reference (NIH)WDR17
Genomic and cartography
GoldenPath hg19 (UCSC)WDR17  -     chr4:176986985-177103979 +  4q34.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WDR17  -     4q34.2   [Description]    (hg38-Dec_2013)
EnsemblWDR17 - 4q34.2 [CytoView hg19]  WDR17 - 4q34.2 [CytoView hg38]
Mapping of homologs : NCBIWDR17 [Mapview hg19]  WDR17 [Mapview hg38]
OMIM609005   
Gene and transcription
Genbank (Entrez)AF492460 AK098748 AK130128 BC118549 BC118627
RefSeq transcript (Entrez)NM_170710 NM_181265
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)WDR17
Cluster EST : UnigeneHs.693278 [ NCBI ]
CGAP (NCI)Hs.693278
Alternative Splicing GalleryENSG00000150627
Gene ExpressionWDR17 [ NCBI-GEO ]   WDR17 [ EBI - ARRAY_EXPRESS ]   WDR17 [ SEEK ]   WDR17 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116966
GTEX Portal (Tissue expression)WDR17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZU2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZU2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZU2
Splice isoforms : SwissVarQ8IZU2
PhosPhoSitePlusQ8IZU2
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    Quinonprotein_ADH-like_supfam    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR17
DMDM Disease mutations116966
Blocks (Seattle)WDR17
SuperfamilyQ8IZU2
Human Protein AtlasENSG00000150627
Peptide AtlasQ8IZU2
HPRD16417
IPIIPI00218077   IPI00477716   IPI00965556   IPI00965885   IPI00965002   IPI00966904   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZU2
IntAct (EBI)Q8IZU2
FunCoupENSG00000150627
BioGRIDWDR17
STRING (EMBL)WDR17
ZODIACWDR17
Ontologies - Pathways
QuickGOQ8IZU2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkWDR17
Atlas of Cancer Signalling NetworkWDR17
Wikipedia pathwaysWDR17
Orthology - Evolution
OrthoDB116966
GeneTree (enSembl)ENSG00000150627
Phylogenetic Trees/Animal Genes : TreeFamWDR17
HOVERGENQ8IZU2
HOGENOMQ8IZU2
Homologs : HomoloGeneWDR17
Homology/Alignments : Family Browser (UCSC)WDR17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR17
dbVarWDR17
ClinVarWDR17
1000_GenomesWDR17 
Exome Variant ServerWDR17
ExAC (Exome Aggregation Consortium)WDR17 (select the gene name)
Genetic variants : HAPMAP116966
Genomic Variants (DGV)WDR17 [DGVbeta]
DECIPHER (Syndromes)4:176986985-177103979  ENSG00000150627
CONAN: Copy Number AnalysisWDR17 
Mutations
ICGC Data PortalWDR17 
TCGA Data PortalWDR17 
Broad Tumor PortalWDR17
OASIS PortalWDR17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR17
DgiDB (Drug Gene Interaction Database)WDR17
DoCM (Curated mutations)WDR17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR17 (select a term)
intoGenWDR17
Cancer3DWDR17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609005   
Orphanet
MedgenWDR17
Genetic Testing Registry WDR17
NextProtQ8IZU2 [Medical]
TSGene116966
GENETestsWDR17
Huge Navigator WDR17 [HugePedia]
snp3D : Map Gene to Disease116966
BioCentury BCIQWDR17
ClinGenWDR17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116966
Chemical/Pharm GKB GenePA38181
Clinical trialWDR17
Miscellaneous
canSAR (ICR)WDR17 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR17
EVEXWDR17
GoPubMedWDR17
iHOPWDR17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:33 CET 2017

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