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WDR18 (WD repeat domain 18)

Identity

Alias_symbol (synonym)Ipi3
Other aliasR32184_1
HGNC (Hugo) WDR18
LocusID (NCBI) 57418
Atlas_Id 54775
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 984328 and ends at 994570 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NFIC (19p13.3) / WDR18 (19p13.3)SAE1 (19q13.32) / WDR18 (19p13.3)WDR18 (19p13.3) / H2AFX (11q23.3)
NFIC 19p13.3 / WDR18 19p13.3SAE1 19q13.32 / WDR18 19p13.3WDR18 19p13.3 / H2AFX 11q23.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR18   17956
Cards
Entrez_Gene (NCBI)WDR18  57418  WD repeat domain 18
AliasesIpi3; R32184_1
GeneCards (Weizmann)WDR18
Ensembl hg19 (Hinxton)ENSG00000065268 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000065268 [Gene_View]  chr19:984328-994570 [Contig_View]  WDR18 [Vega]
ICGC DataPortalENSG00000065268
TCGA cBioPortalWDR18
AceView (NCBI)WDR18
Genatlas (Paris)WDR18
WikiGenes57418
SOURCE (Princeton)WDR18
Genetics Home Reference (NIH)WDR18
Genomic and cartography
GoldenPath hg38 (UCSC)WDR18  -     chr19:984328-994570 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR18  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblWDR18 - 19p13.3 [CytoView hg19]  WDR18 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIWDR18 [Mapview hg19]  WDR18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131009 AL560525 BC000040 BC001648 CB991338
RefSeq transcript (Entrez)NM_024100
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR18
Cluster EST : UnigeneHs.325321 [ NCBI ]
CGAP (NCI)Hs.325321
Alternative Splicing GalleryENSG00000065268
Gene ExpressionWDR18 [ NCBI-GEO ]   WDR18 [ EBI - ARRAY_EXPRESS ]   WDR18 [ SEEK ]   WDR18 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57418
GTEX Portal (Tissue expression)WDR18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BV38   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BV38  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BV38
Splice isoforms : SwissVarQ9BV38
PhosPhoSitePlusQ9BV38
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom    Wdr18_C_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)    WD40_alt (PF14077)   
Domain families : Pfam (NCBI)pfam00400    pfam14077   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR18
DMDM Disease mutations57418
Blocks (Seattle)WDR18
SuperfamilyQ9BV38
Human Protein AtlasENSG00000065268
Peptide AtlasQ9BV38
HPRD18296
IPIIPI00032533   
Protein Interaction databases
DIP (DOE-UCLA)Q9BV38
IntAct (EBI)Q9BV38
FunCoupENSG00000065268
BioGRIDWDR18
STRING (EMBL)WDR18
ZODIACWDR18
Ontologies - Pathways
QuickGOQ9BV38
Ontology : AmiGOprotein binding  nucleoplasm  cytoplasm  rRNA processing  multicellular organism development  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytoplasm  rRNA processing  multicellular organism development  
NDEx NetworkWDR18
Atlas of Cancer Signalling NetworkWDR18
Wikipedia pathwaysWDR18
Orthology - Evolution
OrthoDB57418
GeneTree (enSembl)ENSG00000065268
Phylogenetic Trees/Animal Genes : TreeFamWDR18
HOVERGENQ9BV38
HOGENOMQ9BV38
Homologs : HomoloGeneWDR18
Homology/Alignments : Family Browser (UCSC)WDR18
Gene fusions - Rearrangements
Fusion : MitelmanNFIC/WDR18 [19p13.3/19p13.3]  [t(19;19)(p13;p13)]  
Fusion : MitelmanSAE1/WDR18 [19q13.32/19p13.3]  [t(19;19)(p13;q13)]  
Fusion : MitelmanWDR18/H2AFX [19p13.3/11q23.3]  [t(11;19)(q23;p13)]  
Fusion: TCGANFIC 19p13.3 WDR18 19p13.3 BRCA
Fusion: TCGASAE1 19q13.32 WDR18 19p13.3 KIRC
Fusion: TCGAWDR18 19p13.3 H2AFX 11q23.3 LAML
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR18
dbVarWDR18
ClinVarWDR18
1000_GenomesWDR18 
Exome Variant ServerWDR18
ExAC (Exome Aggregation Consortium)WDR18 (select the gene name)
Genetic variants : HAPMAP57418
Genomic Variants (DGV)WDR18 [DGVbeta]
DECIPHERWDR18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR18 
Mutations
ICGC Data PortalWDR18 
TCGA Data PortalWDR18 
Broad Tumor PortalWDR18
OASIS PortalWDR18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR18
DgiDB (Drug Gene Interaction Database)WDR18
DoCM (Curated mutations)WDR18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR18 (select a term)
intoGenWDR18
Cancer3DWDR18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWDR18
Genetic Testing Registry WDR18
NextProtQ9BV38 [Medical]
TSGene57418
GENETestsWDR18
Target ValidationWDR18
Huge Navigator WDR18 [HugePedia]
snp3D : Map Gene to Disease57418
BioCentury BCIQWDR18
ClinGenWDR18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57418
Chemical/Pharm GKB GenePA38269
Clinical trialWDR18
Miscellaneous
canSAR (ICR)WDR18 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR18
EVEXWDR18
GoPubMedWDR18
iHOPWDR18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:02:45 CEST 2017

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