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WDR19 (WD repeat domain 19)

Identity

Alias_symbol (synonym)Pwdmp
KIAA1638
FLJ23127
ORF26
DYF-2
Oseg6
IFT144
NPHP13
Other aliasATD5
CED4
PWDMP
SRTD5
HGNC (Hugo) WDR19
LocusID (NCBI) 57728
Atlas_Id 50153
Location 4p14  [Link to chromosome band 4p14]
Location_base_pair Starts at 39182404 and ends at 39285810 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MARVELD2 (5q13.2) / WDR19 (4p14)MARVELD2 5q13.2 / WDR19 4p14

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR19   18340
Cards
Entrez_Gene (NCBI)WDR19  57728  WD repeat domain 19
AliasesATD5; CED4; DYF-2; IFT144; 
NPHP13; ORF26; Oseg6; PWDMP; SRTD5
GeneCards (Weizmann)WDR19
Ensembl hg19 (Hinxton)ENSG00000157796 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157796 [Gene_View]  chr4:39182404-39285810 [Contig_View]  WDR19 [Vega]
ICGC DataPortalENSG00000157796
TCGA cBioPortalWDR19
AceView (NCBI)WDR19
Genatlas (Paris)WDR19
WikiGenes57728
SOURCE (Princeton)WDR19
Genetics Home Reference (NIH)WDR19
Genomic and cartography
GoldenPath hg38 (UCSC)WDR19  -     chr4:39182404-39285810 +  4p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR19  -     4p14   [Description]    (hg19-Feb_2009)
EnsemblWDR19 - 4p14 [CytoView hg19]  WDR19 - 4p14 [CytoView hg38]
Mapping of homologs : NCBIWDR19 [Mapview hg19]  WDR19 [Mapview hg38]
OMIM608151   614376   614378   616307   
Gene and transcription
Genbank (Entrez)AB046858 AK026780 AK122908 AK225588 AK294730
RefSeq transcript (Entrez)NM_001317924 NM_025132
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR19
Cluster EST : UnigeneHs.438482 [ NCBI ]
CGAP (NCI)Hs.438482
Alternative Splicing GalleryENSG00000157796
Gene ExpressionWDR19 [ NCBI-GEO ]   WDR19 [ EBI - ARRAY_EXPRESS ]   WDR19 [ SEEK ]   WDR19 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57728
GTEX Portal (Tissue expression)WDR19
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEZ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEZ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEZ3
Splice isoforms : SwissVarQ8NEZ3
PhosPhoSitePlusQ8NEZ3
Domaine pattern : Prosite (Expaxy)WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)TPR-like_helical_dom    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR19
DMDM Disease mutations57728
Blocks (Seattle)WDR19
SuperfamilyQ8NEZ3
Human Protein AtlasENSG00000157796
Peptide AtlasQ8NEZ3
HPRD10489
IPIIPI00396243   IPI00743099   IPI01010476   IPI00873175   IPI01021836   IPI00964521   IPI00969028   IPI00967446   IPI00964451   IPI00964219   IPI00964718   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEZ3
IntAct (EBI)Q8NEZ3
FunCoupENSG00000157796
BioGRIDWDR19
STRING (EMBL)WDR19
ZODIACWDR19
Ontologies - Pathways
QuickGOQ8NEZ3
Ontology : AmiGOcell morphogenesis  in utero embryonic development  photoreceptor outer segment  nucleoplasm  cytoplasm  cytoskeleton  cilium  cilium  gonad development  embryonic limb morphogenesis  intraciliary transport particle A  embryonic camera-type eye development  motile cilium  photoreceptor connecting cilium  intraciliary retrograde transport  intraciliary transport involved in cilium assembly  ear morphogenesis  embryonic cranial skeleton morphogenesis  neurological system process  digestive system development  cilium assembly  ciliary receptor clustering involved in smoothened signaling pathway  smoothened signaling pathway involved in dorsal/ventral neural tube patterning  myotome development  ciliary tip  non-motile cilium  
Ontology : EGO-EBIcell morphogenesis  in utero embryonic development  photoreceptor outer segment  nucleoplasm  cytoplasm  cytoskeleton  cilium  cilium  gonad development  embryonic limb morphogenesis  intraciliary transport particle A  embryonic camera-type eye development  motile cilium  photoreceptor connecting cilium  intraciliary retrograde transport  intraciliary transport involved in cilium assembly  ear morphogenesis  embryonic cranial skeleton morphogenesis  neurological system process  digestive system development  cilium assembly  ciliary receptor clustering involved in smoothened signaling pathway  smoothened signaling pathway involved in dorsal/ventral neural tube patterning  myotome development  ciliary tip  non-motile cilium  
NDEx NetworkWDR19
Atlas of Cancer Signalling NetworkWDR19
Wikipedia pathwaysWDR19
Orthology - Evolution
OrthoDB57728
GeneTree (enSembl)ENSG00000157796
Phylogenetic Trees/Animal Genes : TreeFamWDR19
HOVERGENQ8NEZ3
HOGENOMQ8NEZ3
Homologs : HomoloGeneWDR19
Homology/Alignments : Family Browser (UCSC)WDR19
Gene fusions - Rearrangements
Fusion : MitelmanMARVELD2/WDR19 [5q13.2/4p14]  [t(4;5)(p14;q13)]  
Fusion: TCGAMARVELD2 5q13.2 WDR19 4p14 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR19
dbVarWDR19
ClinVarWDR19
1000_GenomesWDR19 
Exome Variant ServerWDR19
ExAC (Exome Aggregation Consortium)WDR19 (select the gene name)
Genetic variants : HAPMAP57728
Genomic Variants (DGV)WDR19 [DGVbeta]
DECIPHERWDR19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR19 
Mutations
ICGC Data PortalWDR19 
TCGA Data PortalWDR19 
Broad Tumor PortalWDR19
OASIS PortalWDR19 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDWDR19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR19
DgiDB (Drug Gene Interaction Database)WDR19
DoCM (Curated mutations)WDR19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR19 (select a term)
intoGenWDR19
Cancer3DWDR19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608151    614376    614378    616307   
Orphanet283    1682    2824    12427   
MedgenWDR19
Genetic Testing Registry WDR19
NextProtQ8NEZ3 [Medical]
TSGene57728
GENETestsWDR19
Target ValidationWDR19
Huge Navigator WDR19 [HugePedia]
snp3D : Map Gene to Disease57728
BioCentury BCIQWDR19
ClinGenWDR19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57728
Chemical/Pharm GKB GenePA38317
Clinical trialWDR19
Miscellaneous
canSAR (ICR)WDR19 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR19
EVEXWDR19
GoPubMedWDR19
iHOPWDR19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:38:14 CEST 2017

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