Atlas of Genetics and Cytogenetics in Oncology and Haematology


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WDR19 (WD repeat domain 19)

Identity

Other namesATD5
CED4
DYF-2
IFT144
NPHP13
ORF26
Oseg6
PWDMP
SRTD5
HGNC (Hugo) WDR19
LocusID (NCBI) 57728
Location 4p14
Location_base_pair Starts at 39184024 and ends at 39287430 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)WDR19   18340
Cards
Entrez_Gene (NCBI)WDR19  57728  WD repeat domain 19
GeneCards (Weizmann)WDR19
Ensembl (Hinxton)ENSG00000157796 [Gene_View]  chr4:39184024-39287430 [Contig_View]  WDR19 [Vega]
ICGC DataPortalENSG00000157796
cBioPortalWDR19
AceView (NCBI)WDR19
Genatlas (Paris)WDR19
WikiGenes57728
SOURCE (Princeton)NM_025132
Genomic and cartography
GoldenPath (UCSC)WDR19  -  4p14   chr4:39184024-39287430 +  4p14   [Description]    (hg19-Feb_2009)
EnsemblWDR19 - 4p14 [CytoView]
Mapping of homologs : NCBIWDR19 [Mapview]
OMIM608151   614376   614378   
Gene and transcription
Genbank (Entrez)AB046858 AK026780 AK122908 AK225588 AK294730
RefSeq transcript (Entrez)NM_025132
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NG_031813 NT_006238 NW_001838902 NW_004929317
Consensus coding sequences : CCDS (NCBI)WDR19
Cluster EST : UnigeneHs.438482 [ NCBI ]
CGAP (NCI)Hs.438482
Alternative Splicing : Fast-db (Paris)GSHG0022539
Alternative Splicing GalleryENSG00000157796
Gene ExpressionWDR19 [ NCBI-GEO ]     WDR19 [ SEEK ]   WDR19 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEZ3 (Uniprot)
NextProtQ8NEZ3  [Medical]
With graphics : InterProQ8NEZ3
Splice isoforms : SwissVarQ8NEZ3 (Swissvar)
Domaine pattern : Prosite (Expaxy)WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)TPR-like_helical [organisation]   WD40/YVTN_repeat-like_dom [organisation]   WD40_repeat [organisation]   WD40_repeat_dom [organisation]  
Related proteins : CluSTrQ8NEZ3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)WD40 (SM00320)  
DMDM Disease mutations57728
Blocks (Seattle)Q8NEZ3
Human Protein AtlasENSG00000157796 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ8NEZ3
HPRD10489
IPIIPI00396243   IPI00743099   IPI01010476   IPI00873175   IPI01021836   IPI00964521   IPI00969028   IPI00967446   IPI00964451   IPI00964219   IPI00964718   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEZ3
IntAct (EBI)Q8NEZ3
FunCoupENSG00000157796
BioGRIDWDR19
InParanoidQ8NEZ3
Interologous Interaction database Q8NEZ3
IntegromeDBWDR19
STRING (EMBL)WDR19
Ontologies - Pathways
Ontology : AmiGOin utero embryonic development  cytoplasm  cytoskeleton  embryonic limb morphogenesis  intraciliary transport particle A  embryonic camera-type eye development  nonmotile primary cilium  motile cilium  photoreceptor connecting cilium  intraciliary retrograde transport  cilium assembly  ear morphogenesis  embryonic cranial skeleton morphogenesis  neurological system process  digestive system development  ciliary receptor clustering involved in smoothened signaling pathway  smoothened signaling pathway involved in dorsal/ventral neural tube patterning  myotome development  
Ontology : EGO-EBIin utero embryonic development  cytoplasm  cytoskeleton  embryonic limb morphogenesis  intraciliary transport particle A  embryonic camera-type eye development  nonmotile primary cilium  motile cilium  photoreceptor connecting cilium  intraciliary retrograde transport  cilium assembly  ear morphogenesis  embryonic cranial skeleton morphogenesis  neurological system process  digestive system development  ciliary receptor clustering involved in smoothened signaling pathway  smoothened signaling pathway involved in dorsal/ventral neural tube patterning  myotome development  
Protein Interaction DatabaseWDR19
Wikipedia pathwaysWDR19
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)WDR19
snp3D : Map Gene to Disease57728
SNP (GeneSNP Utah)WDR19
SNP : HGBaseWDR19
Genetic variants : HAPMAPWDR19
Exome VariantWDR19
1000_GenomesWDR19 
ICGC programENSG00000157796 
Somatic Mutations in Cancer : COSMICWDR19 
CONAN: Copy Number AnalysisWDR19 
Mutations and Diseases : HGMDWDR19
Mutations and Diseases : intOGenWDR19
Genomic VariantsWDR19  WDR19 [DGVbeta]
dbVarWDR19
ClinVarWDR19
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM608151    614376    614378   
MedgenWDR19
GENETestsWDR19
Disease Genetic AssociationWDR19
Huge Navigator WDR19 [HugePedia]  WDR19 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneWDR19
Homology/Alignments : Family Browser (UCSC)WDR19
Phylogenetic Trees/Animal Genes : TreeFamWDR19
Chemical/Protein Interactions : CTD57728
Chemical/Pharm GKB GenePA38317
Clinical trialWDR19
Cancer Resource (Charite)ENSG00000157796
Other databases
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
CoreMineWDR19
iHOPWDR19
OncoSearchWDR19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 19:25:36 CEST 2014

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