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WDR19 (WD repeat domain 19)

Identity

Other namesATD5
CED4
DYF-2
IFT144
NPHP13
ORF26
Oseg6
PWDMP
SRTD5
HGNC (Hugo) WDR19
LocusID (NCBI) 57728
Atlas_Id 50153
Location 4p14
Location_base_pair Starts at 39184024 and ends at 39287430 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MARVELD2 (5q13.2) / WDR19 (4p14)MARVELD2 5q13.2 / WDR19 4p14

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR19   18340
Cards
Entrez_Gene (NCBI)WDR19  57728  WD repeat domain 19
AliasesATD5; CED4; DYF-2; IFT144; 
NPHP13; ORF26; Oseg6; PWDMP; SRTD5
GeneCards (Weizmann)WDR19
Ensembl hg19 (Hinxton)ENSG00000157796 [Gene_View]  chr4:39184024-39287430 [Contig_View]  WDR19 [Vega]
Ensembl hg38 (Hinxton)ENSG00000157796 [Gene_View]  chr4:39184024-39287430 [Contig_View]  WDR19 [Vega]
ICGC DataPortalENSG00000157796
TCGA cBioPortalWDR19
AceView (NCBI)WDR19
Genatlas (Paris)WDR19
WikiGenes57728
SOURCE (Princeton)WDR19
Genomic and cartography
GoldenPath hg19 (UCSC)WDR19  -     chr4:39184024-39287430 +  4p14   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WDR19  -     4p14   [Description]    (hg38-Dec_2013)
EnsemblWDR19 - 4p14 [CytoView hg19]  WDR19 - 4p14 [CytoView hg38]
Mapping of homologs : NCBIWDR19 [Mapview hg19]  WDR19 [Mapview hg38]
OMIM608151   614376   614378   616307   
Gene and transcription
Genbank (Entrez)AB046858 AK026780 AK122908 AK225588 AK294730
RefSeq transcript (Entrez)NM_001317924 NM_025132
RefSeq genomic (Entrez)NC_000004 NC_018915 NG_031813 NT_006238 NW_004929317
Consensus coding sequences : CCDS (NCBI)WDR19
Cluster EST : UnigeneHs.438482 [ NCBI ]
CGAP (NCI)Hs.438482
Alternative Splicing GalleryENSG00000157796
Gene ExpressionWDR19 [ NCBI-GEO ]   WDR19 [ EBI - ARRAY_EXPRESS ]   WDR19 [ SEEK ]   WDR19 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57728
GTEX Portal (Tissue expression)WDR19
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEZ3 (Uniprot)
NextProtQ8NEZ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEZ3
Splice isoforms : SwissVarQ8NEZ3 (Swissvar)
PhosPhoSitePlusQ8NEZ3
Domaine pattern : Prosite (Expaxy)WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)TPR-like_helical_dom    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)WD40 (SM00320)  
DMDM Disease mutations57728
Blocks (Seattle)WDR19
SuperfamilyQ8NEZ3
Human Protein AtlasENSG00000157796
Peptide AtlasQ8NEZ3
HPRD10489
IPIIPI00396243   IPI00743099   IPI01010476   IPI00873175   IPI01021836   IPI00964521   IPI00969028   IPI00967446   IPI00964451   IPI00964219   IPI00964718   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEZ3
IntAct (EBI)Q8NEZ3
FunCoupENSG00000157796
BioGRIDWDR19
STRING (EMBL)WDR19
ZODIACWDR19
Ontologies - Pathways
QuickGOQ8NEZ3
Ontology : AmiGOin utero embryonic development  nucleoplasm  cytoplasm  cytoskeleton  plasma membrane  cilium  gonad development  embryonic limb morphogenesis  intraciliary transport particle A  embryonic camera-type eye development  nonmotile primary cilium  motile cilium  photoreceptor connecting cilium  intraciliary retrograde transport  cilium assembly  ear morphogenesis  embryonic cranial skeleton morphogenesis  neurological system process  digestive system development  ciliary receptor clustering involved in smoothened signaling pathway  smoothened signaling pathway involved in dorsal/ventral neural tube patterning  myotome development  primary cilium  ciliary tip  
Ontology : EGO-EBIin utero embryonic development  nucleoplasm  cytoplasm  cytoskeleton  plasma membrane  cilium  gonad development  embryonic limb morphogenesis  intraciliary transport particle A  embryonic camera-type eye development  nonmotile primary cilium  motile cilium  photoreceptor connecting cilium  intraciliary retrograde transport  cilium assembly  ear morphogenesis  embryonic cranial skeleton morphogenesis  neurological system process  digestive system development  ciliary receptor clustering involved in smoothened signaling pathway  smoothened signaling pathway involved in dorsal/ventral neural tube patterning  myotome development  primary cilium  ciliary tip  
NDEx Network
Atlas of Cancer Signalling NetworkWDR19
Wikipedia pathwaysWDR19
Orthology - Evolution
OrthoDB57728
GeneTree (enSembl)ENSG00000157796
Phylogenetic Trees/Animal Genes : TreeFamWDR19
Homologs : HomoloGeneWDR19
Homology/Alignments : Family Browser (UCSC)WDR19
Gene fusions - Rearrangements
Fusion: TCGAMARVELD2 5q13.2 WDR19 4p14 LUAD
Polymorphisms : SNP, variants
NCBI Variation ViewerWDR19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR19
dbVarWDR19
ClinVarWDR19
1000_GenomesWDR19 
Exome Variant ServerWDR19
ExAC (Exome Aggregation Consortium)WDR19 (select the gene name)
Genetic variants : HAPMAP57728
Genomic Variants (DGV)WDR19 [DGVbeta]
Mutations
ICGC Data PortalWDR19 
TCGA Data PortalWDR19 
Broad Tumor PortalWDR19
OASIS PortalWDR19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR19 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR19
DgiDB (Drug Gene Interaction Database)WDR19
DoCM (Curated mutations)WDR19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR19 (select a term)
intoGenWDR19
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)4:39184024-39287430  ENSG00000157796
CONAN: Copy Number AnalysisWDR19 
Mutations and Diseases : HGMDWDR19
OMIM608151    614376    614378    616307   
MedgenWDR19
Genetic Testing Registry WDR19
NextProtQ8NEZ3 [Medical]
TSGene57728
GENETestsWDR19
Huge Navigator WDR19 [HugePedia]
snp3D : Map Gene to Disease57728
BioCentury BCIQWDR19
ClinGenWDR19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57728
Chemical/Pharm GKB GenePA38317
Clinical trialWDR19
Miscellaneous
canSAR (ICR)WDR19 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR19
EVEXWDR19
GoPubMedWDR19
iHOPWDR19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat May 28 11:27:24 CEST 2016

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