Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

WDR20 (WD repeat domain 20)

Identity

Alias_symbol (synonym)DMR
MGC33177
FLJ33659
Other alias
HGNC (Hugo) WDR20
LocusID (NCBI) 91833
Atlas_Id 54776
Location 14q32.31  [Link to chromosome band 14q32]
Location_base_pair Starts at 102139852 and ends at 102210530 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SMG6 (17p13.3) / WDR20 (14q32.31)WDR20 (14q32.31) / AKT3 (1q43)WDR20 (14q32.31) / ASNA1 (19p13.2)
WDR20 (14q32.31) / DYNC1H1 (14q32.31)SMG6 17p13.3 / WDR20 14q32.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR20   19667
Cards
Entrez_Gene (NCBI)WDR20  91833  WD repeat domain 20
AliasesDMR
GeneCards (Weizmann)WDR20
Ensembl hg19 (Hinxton)ENSG00000140153 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140153 [Gene_View]  chr14:102139852-102210530 [Contig_View]  WDR20 [Vega]
ICGC DataPortalENSG00000140153
TCGA cBioPortalWDR20
AceView (NCBI)WDR20
Genatlas (Paris)WDR20
WikiGenes91833
SOURCE (Princeton)WDR20
Genetics Home Reference (NIH)WDR20
Genomic and cartography
GoldenPath hg38 (UCSC)WDR20  -     chr14:102139852-102210530 +  14q32.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR20  -     14q32.31   [Description]    (hg19-Feb_2009)
EnsemblWDR20 - 14q32.31 [CytoView hg19]  WDR20 - 14q32.31 [CytoView hg38]
Mapping of homologs : NCBIWDR20 [Mapview hg19]  WDR20 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209148 AF327354 AK054748 AK056330 AK090580
RefSeq transcript (Entrez)NM_001242414 NM_001242415 NM_001242416 NM_001242417 NM_001242418 NM_001320130 NM_001330228 NM_144574 NM_181291 NM_181302 NM_181308
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR20
Cluster EST : UnigeneHs.36859 [ NCBI ]
CGAP (NCI)Hs.36859
Alternative Splicing GalleryENSG00000140153
Gene ExpressionWDR20 [ NCBI-GEO ]   WDR20 [ EBI - ARRAY_EXPRESS ]   WDR20 [ SEEK ]   WDR20 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91833
GTEX Portal (Tissue expression)WDR20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBZ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBZ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBZ3
Splice isoforms : SwissVarQ8TBZ3
PhosPhoSitePlusQ8TBZ3
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR20
DMDM Disease mutations91833
Blocks (Seattle)WDR20
PDB (SRS)5K19    5K1C   
PDB (PDBSum)5K19    5K1C   
PDB (IMB)5K19    5K1C   
PDB (RSDB)5K19    5K1C   
Structural Biology KnowledgeBase5K19    5K1C   
SCOP (Structural Classification of Proteins)5K19    5K1C   
CATH (Classification of proteins structures)5K19    5K1C   
SuperfamilyQ8TBZ3
Human Protein AtlasENSG00000140153
Peptide AtlasQ8TBZ3
HPRD11679
IPIIPI00844142   IPI00290950   IPI01010557   IPI00377222   IPI00910280   IPI00903228   IPI01009260   IPI01026150   IPI00168408   IPI01026503   IPI01025829   IPI01026390   IPI00329787   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBZ3
IntAct (EBI)Q8TBZ3
FunCoupENSG00000140153
BioGRIDWDR20
STRING (EMBL)WDR20
ZODIACWDR20
Ontologies - Pathways
QuickGOQ8TBZ3
Ontology : AmiGOprotein binding  nucleoplasm  protein deubiquitination  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
Ontology : EGO-EBIprotein binding  nucleoplasm  protein deubiquitination  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
NDEx NetworkWDR20
Atlas of Cancer Signalling NetworkWDR20
Wikipedia pathwaysWDR20
Orthology - Evolution
OrthoDB91833
GeneTree (enSembl)ENSG00000140153
Phylogenetic Trees/Animal Genes : TreeFamWDR20
HOVERGENQ8TBZ3
HOGENOMQ8TBZ3
Homologs : HomoloGeneWDR20
Homology/Alignments : Family Browser (UCSC)WDR20
Gene fusions - Rearrangements
Fusion : MitelmanSMG6/WDR20 [17p13.3/14q32.31]  [t(14;17)(q32;p13)]  
Fusion : MitelmanWDR20/ASNA1 [14q32.31/19p13.2]  [t(14;19)(q32;p13)]  
Fusion: TCGASMG6 17p13.3 WDR20 14q32.31 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR20
dbVarWDR20
ClinVarWDR20
1000_GenomesWDR20 
Exome Variant ServerWDR20
ExAC (Exome Aggregation Consortium)WDR20 (select the gene name)
Genetic variants : HAPMAP91833
Genomic Variants (DGV)WDR20 [DGVbeta]
DECIPHERWDR20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR20 
Mutations
ICGC Data PortalWDR20 
TCGA Data PortalWDR20 
Broad Tumor PortalWDR20
OASIS PortalWDR20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR20
DgiDB (Drug Gene Interaction Database)WDR20
DoCM (Curated mutations)WDR20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR20 (select a term)
intoGenWDR20
Cancer3DWDR20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWDR20
Genetic Testing Registry WDR20
NextProtQ8TBZ3 [Medical]
TSGene91833
GENETestsWDR20
Target ValidationWDR20
Huge Navigator WDR20 [HugePedia]
snp3D : Map Gene to Disease91833
BioCentury BCIQWDR20
ClinGenWDR20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91833
Chemical/Pharm GKB GenePA134936678
Clinical trialWDR20
Miscellaneous
canSAR (ICR)WDR20 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR20
EVEXWDR20
GoPubMedWDR20
iHOPWDR20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:18:52 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.