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WDR24 (WD repeat domain 24)

Identity

Alias_namesC16orf21
chromosome 16 open reading frame 21
Alias_symbol (synonym)DKFZp434F054
JFP7
Other alias
HGNC (Hugo) WDR24
LocusID (NCBI) 84219
Atlas_Id 75703
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 734622 and ends at 740424 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TRAF7 (16p13.3) / WDR24 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR24   20852
Cards
Entrez_Gene (NCBI)WDR24  84219  WD repeat domain 24
AliasesC16orf21; JFP7
GeneCards (Weizmann)WDR24
Ensembl hg19 (Hinxton)ENSG00000127580 [Gene_View]  chr16:734622-740424 [Contig_View]  WDR24 [Vega]
Ensembl hg38 (Hinxton)ENSG00000127580 [Gene_View]  chr16:734622-740424 [Contig_View]  WDR24 [Vega]
ICGC DataPortalENSG00000127580
TCGA cBioPortalWDR24
AceView (NCBI)WDR24
Genatlas (Paris)WDR24
WikiGenes84219
SOURCE (Princeton)WDR24
Genetics Home Reference (NIH)WDR24
Genomic and cartography
GoldenPath hg19 (UCSC)WDR24  -     chr16:734622-740424 -  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WDR24  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblWDR24 - 16p13.3 [CytoView hg19]  WDR24 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIWDR24 [Mapview hg19]  WDR24 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK301146 AL136863 AM393299 BC008025 BC009761
RefSeq transcript (Entrez)NM_032259
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)WDR24
Cluster EST : UnigeneHs.459632 [ NCBI ]
CGAP (NCI)Hs.459632
Alternative Splicing GalleryENSG00000127580
Gene ExpressionWDR24 [ NCBI-GEO ]   WDR24 [ EBI - ARRAY_EXPRESS ]   WDR24 [ SEEK ]   WDR24 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84219
GTEX Portal (Tissue expression)WDR24
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96S15   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96S15  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96S15
Splice isoforms : SwissVarQ96S15
PhosPhoSitePlusQ96S15
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR24
DMDM Disease mutations84219
Blocks (Seattle)WDR24
SuperfamilyQ96S15
Human Protein AtlasENSG00000127580
Peptide AtlasQ96S15
HPRD15665
IPIIPI00045472   IPI00031042   IPI00909592   
Protein Interaction databases
DIP (DOE-UCLA)Q96S15
IntAct (EBI)Q96S15
FunCoupENSG00000127580
BioGRIDWDR24
STRING (EMBL)WDR24
ZODIACWDR24
Ontologies - Pathways
QuickGOQ96S15
Ontology : AmiGOprotein binding  positive regulation of TOR signaling  cellular response to amino acid starvation  GATOR2 complex  
Ontology : EGO-EBIprotein binding  positive regulation of TOR signaling  cellular response to amino acid starvation  GATOR2 complex  
NDEx NetworkWDR24
Atlas of Cancer Signalling NetworkWDR24
Wikipedia pathwaysWDR24
Orthology - Evolution
OrthoDB84219
GeneTree (enSembl)ENSG00000127580
Phylogenetic Trees/Animal Genes : TreeFamWDR24
HOVERGENQ96S15
HOGENOMQ96S15
Homologs : HomoloGeneWDR24
Homology/Alignments : Family Browser (UCSC)WDR24
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR24
dbVarWDR24
ClinVarWDR24
1000_GenomesWDR24 
Exome Variant ServerWDR24
ExAC (Exome Aggregation Consortium)WDR24 (select the gene name)
Genetic variants : HAPMAP84219
Genomic Variants (DGV)WDR24 [DGVbeta]
DECIPHER (Syndromes)16:734622-740424  ENSG00000127580
CONAN: Copy Number AnalysisWDR24 
Mutations
ICGC Data PortalWDR24 
TCGA Data PortalWDR24 
Broad Tumor PortalWDR24
OASIS PortalWDR24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR24
DgiDB (Drug Gene Interaction Database)WDR24
DoCM (Curated mutations)WDR24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR24 (select a term)
intoGenWDR24
Cancer3DWDR24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWDR24
Genetic Testing Registry WDR24
NextProtQ96S15 [Medical]
TSGene84219
GENETestsWDR24
Huge Navigator WDR24 [HugePedia]
snp3D : Map Gene to Disease84219
BioCentury BCIQWDR24
ClinGenWDR24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84219
Chemical/Pharm GKB GenePA134918496
Clinical trialWDR24
Miscellaneous
canSAR (ICR)WDR24 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR24
EVEXWDR24
GoPubMedWDR24
iHOPWDR24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:33 CET 2017

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