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WDR25 (WD repeat domain 25)

Identity

Alias_namesC14orf67
chromosome 14 open reading frame 67
Alias_symbol (synonym)MGC4645
Other alias
HGNC (Hugo) WDR25
LocusID (NCBI) 79446
Atlas_Id 75704
Location 14q32.2  [Link to chromosome band 14q32]
Location_base_pair Starts at 100842755 and ends at 100996640 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PATZ1 (22q12.2) / WDR25 (14q32.2)YY1 (14q32.2) / WDR25 (14q32.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR25   21064
Cards
Entrez_Gene (NCBI)WDR25  79446  WD repeat domain 25
AliasesC14orf67
GeneCards (Weizmann)WDR25
Ensembl hg19 (Hinxton)ENSG00000176473 [Gene_View]  chr14:100842755-100996640 [Contig_View]  WDR25 [Vega]
Ensembl hg38 (Hinxton)ENSG00000176473 [Gene_View]  chr14:100842755-100996640 [Contig_View]  WDR25 [Vega]
ICGC DataPortalENSG00000176473
TCGA cBioPortalWDR25
AceView (NCBI)WDR25
Genatlas (Paris)WDR25
WikiGenes79446
SOURCE (Princeton)WDR25
Genetics Home Reference (NIH)WDR25
Genomic and cartography
GoldenPath hg19 (UCSC)WDR25  -     chr14:100842755-100996640 +  14q32.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WDR25  -     14q32.2   [Description]    (hg38-Dec_2013)
EnsemblWDR25 - 14q32.2 [CytoView hg19]  WDR25 - 14q32.2 [CytoView hg38]
Mapping of homologs : NCBIWDR25 [Mapview hg19]  WDR25 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK291960 AY295082 BC003641 BC007953 BC067872
RefSeq transcript (Entrez)NM_001161476 NM_024515
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)WDR25
Cluster EST : UnigeneHs.497600 [ NCBI ]
CGAP (NCI)Hs.497600
Alternative Splicing GalleryENSG00000176473
Gene ExpressionWDR25 [ NCBI-GEO ]   WDR25 [ EBI - ARRAY_EXPRESS ]   WDR25 [ SEEK ]   WDR25 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79446
GTEX Portal (Tissue expression)WDR25
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ64LD2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ64LD2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ64LD2
Splice isoforms : SwissVarQ64LD2
PhosPhoSitePlusQ64LD2
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR25
DMDM Disease mutations79446
Blocks (Seattle)WDR25
SuperfamilyQ64LD2
Human Protein AtlasENSG00000176473
Peptide AtlasQ64LD2
HPRD14649
IPIIPI00465281   IPI00796363   IPI01025241   IPI01025159   IPI01024979   
Protein Interaction databases
DIP (DOE-UCLA)Q64LD2
IntAct (EBI)Q64LD2
FunCoupENSG00000176473
BioGRIDWDR25
STRING (EMBL)WDR25
ZODIACWDR25
Ontologies - Pathways
QuickGOQ64LD2
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkWDR25
Atlas of Cancer Signalling NetworkWDR25
Wikipedia pathwaysWDR25
Orthology - Evolution
OrthoDB79446
GeneTree (enSembl)ENSG00000176473
Phylogenetic Trees/Animal Genes : TreeFamWDR25
HOVERGENQ64LD2
HOGENOMQ64LD2
Homologs : HomoloGeneWDR25
Homology/Alignments : Family Browser (UCSC)WDR25
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR25
dbVarWDR25
ClinVarWDR25
1000_GenomesWDR25 
Exome Variant ServerWDR25
ExAC (Exome Aggregation Consortium)WDR25 (select the gene name)
Genetic variants : HAPMAP79446
Genomic Variants (DGV)WDR25 [DGVbeta]
DECIPHER (Syndromes)14:100842755-100996640  ENSG00000176473
CONAN: Copy Number AnalysisWDR25 
Mutations
ICGC Data PortalWDR25 
TCGA Data PortalWDR25 
Broad Tumor PortalWDR25
OASIS PortalWDR25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR25
DgiDB (Drug Gene Interaction Database)WDR25
DoCM (Curated mutations)WDR25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR25 (select a term)
intoGenWDR25
Cancer3DWDR25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWDR25
Genetic Testing Registry WDR25
NextProtQ64LD2 [Medical]
TSGene79446
GENETestsWDR25
Huge Navigator WDR25 [HugePedia]
snp3D : Map Gene to Disease79446
BioCentury BCIQWDR25
ClinGenWDR25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79446
Chemical/Pharm GKB GenePA142670607
Clinical trialWDR25
Miscellaneous
canSAR (ICR)WDR25 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR25
EVEXWDR25
GoPubMedWDR25
iHOPWDR25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:34 CET 2017

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