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WDR27 (WD repeat domain 27)

Identity

Alias_symbol (synonym)MGC43690
Other alias-
HGNC (Hugo) WDR27
LocusID (NCBI) 253769
Atlas_Id 75705
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 169457208 and ends at 169702063 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
WDR27 (6q27) / CRLF2 (Xp22.33)WDR27 (6q27) / QKI (6q26)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR27   21248
LRG (Locus Reference Genomic)LRG_1071
Cards
Entrez_Gene (NCBI)WDR27  253769  WD repeat domain 27
Aliases
GeneCards (Weizmann)WDR27
Ensembl hg19 (Hinxton)ENSG00000184465 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184465 [Gene_View]  chr6:169457208-169702063 [Contig_View]  WDR27 [Vega]
ICGC DataPortalENSG00000184465
TCGA cBioPortalWDR27
AceView (NCBI)WDR27
Genatlas (Paris)WDR27
WikiGenes253769
SOURCE (Princeton)WDR27
Genetics Home Reference (NIH)WDR27
Genomic and cartography
GoldenPath hg38 (UCSC)WDR27  -     chr6:169457208-169702063 -  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR27  -     6q27   [Description]    (hg19-Feb_2009)
EnsemblWDR27 - 6q27 [CytoView hg19]  WDR27 - 6q27 [CytoView hg38]
Mapping of homologs : NCBIWDR27 [Mapview hg19]  WDR27 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128656 AK131435 AK293148 AW194823 BC035289
RefSeq transcript (Entrez)NM_001202550 NM_001350623 NM_001350624 NM_001350625 NM_182552
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR27
Cluster EST : UnigeneHs.131903 [ NCBI ]
CGAP (NCI)Hs.131903
Alternative Splicing GalleryENSG00000184465
Gene ExpressionWDR27 [ NCBI-GEO ]   WDR27 [ EBI - ARRAY_EXPRESS ]   WDR27 [ SEEK ]   WDR27 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)253769
GTEX Portal (Tissue expression)WDR27
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2RRH5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2RRH5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2RRH5
Splice isoforms : SwissVarA2RRH5
PhosPhoSitePlusA2RRH5
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)Quinoprotein_ADH-like_supfam    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR27
DMDM Disease mutations253769
Blocks (Seattle)WDR27
SuperfamilyA2RRH5
Human Protein AtlasENSG00000184465
Peptide AtlasA2RRH5
HPRD11352
IPIIPI00867634   IPI01008842   IPI00908536   IPI00902979   IPI00442228   IPI00443642   IPI00161498   
Protein Interaction databases
DIP (DOE-UCLA)A2RRH5
IntAct (EBI)A2RRH5
FunCoupENSG00000184465
BioGRIDWDR27
STRING (EMBL)WDR27
ZODIACWDR27
Ontologies - Pathways
QuickGOA2RRH5
Ontology : AmiGOprotein binding  nucleoplasm  
Ontology : EGO-EBIprotein binding  nucleoplasm  
NDEx NetworkWDR27
Atlas of Cancer Signalling NetworkWDR27
Wikipedia pathwaysWDR27
Orthology - Evolution
OrthoDB253769
GeneTree (enSembl)ENSG00000184465
Phylogenetic Trees/Animal Genes : TreeFamWDR27
HOVERGENA2RRH5
HOGENOMA2RRH5
Homologs : HomoloGeneWDR27
Homology/Alignments : Family Browser (UCSC)WDR27
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR27
dbVarWDR27
ClinVarWDR27
1000_GenomesWDR27 
Exome Variant ServerWDR27
ExAC (Exome Aggregation Consortium)WDR27 (select the gene name)
Genetic variants : HAPMAP253769
Genomic Variants (DGV)WDR27 [DGVbeta]
DECIPHERWDR27 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR27 
Mutations
ICGC Data PortalWDR27 
TCGA Data PortalWDR27 
Broad Tumor PortalWDR27
OASIS PortalWDR27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR27  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR27
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR27
DgiDB (Drug Gene Interaction Database)WDR27
DoCM (Curated mutations)WDR27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR27 (select a term)
intoGenWDR27
Cancer3DWDR27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWDR27
Genetic Testing Registry WDR27
NextProtA2RRH5 [Medical]
TSGene253769
GENETestsWDR27
Target ValidationWDR27
Huge Navigator WDR27 [HugePedia]
snp3D : Map Gene to Disease253769
BioCentury BCIQWDR27
ClinGenWDR27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD253769
Chemical/Pharm GKB GenePA134875091
Clinical trialWDR27
Miscellaneous
canSAR (ICR)WDR27 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR27
EVEXWDR27
GoPubMedWDR27
iHOPWDR27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:45 CEST 2017

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