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WDR31 (WD repeat domain 31)

Identity

Alias (NCBI)-
HGNC (Hugo) WDR31
HGNC Alias symbFLJ35921
HGNC Alias namesimilar to spermatid WD-repeat protein
LocusID (NCBI) 114987
Atlas_Id 75706
Location 9q32  [Link to chromosome band 9q32]
Location_base_pair Starts at 113313222 and ends at 113340340 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MAP1A (15q15.3) / WDR31 (9q32)WDR31 (9q32) / WDR31 (9q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)WDR31   21421
Cards
Entrez_Gene (NCBI)WDR31    WD repeat domain 31
Aliases
GeneCards (Weizmann)WDR31
Ensembl hg19 (Hinxton)ENSG00000148225 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148225 [Gene_View]  ENSG00000148225 [Sequence]  chr9:113313222-113340340 [Contig_View]  WDR31 [Vega]
ICGC DataPortalENSG00000148225
TCGA cBioPortalWDR31
AceView (NCBI)WDR31
Genatlas (Paris)WDR31
SOURCE (Princeton)WDR31
Genetics Home Reference (NIH)WDR31
Genomic and cartography
GoldenPath hg38 (UCSC)WDR31  -     chr9:113313222-113340340 -  9q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR31  -     9q32   [Description]    (hg19-Feb_2009)
GoldenPathWDR31 - 9q32 [CytoView hg19]  WDR31 - 9q32 [CytoView hg38]
ImmunoBaseENSG00000148225
genome Data Viewer NCBIWDR31 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI091187 AK074891 AK093240 AK129868 AK313843
RefSeq transcript (Entrez)NM_001006615 NM_001012361 NM_145241
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR31
Alternative Splicing GalleryENSG00000148225
Gene ExpressionWDR31 [ NCBI-GEO ]   WDR31 [ EBI - ARRAY_EXPRESS ]   WDR31 [ SEEK ]   WDR31 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR31 [ Firebrowse - Broad ]
GenevisibleExpression of WDR31 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114987
GTEX Portal (Tissue expression)WDR31
Human Protein AtlasENSG00000148225-WDR31 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA23   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NA23  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA23
Splice isoforms : SwissVarQ8NA23
PhosPhoSitePlusQ8NA23
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    WD40/YVTN_repeat-like_dom_sf    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom    WD40_repeat_dom_sf    WDR31   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR31
Blocks (Seattle)WDR31
SuperfamilyQ8NA23
Human Protein Atlas [tissue]ENSG00000148225-WDR31 [tissue]
Peptide AtlasQ8NA23
HPRD18299
IPIIPI00329568   IPI00396427   IPI00480067   IPI00947489   IPI00946329   
Protein Interaction databases
DIP (DOE-UCLA)Q8NA23
IntAct (EBI)Q8NA23
BioGRIDWDR31
STRING (EMBL)WDR31
ZODIACWDR31
Ontologies - Pathways
QuickGOQ8NA23
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkWDR31
Atlas of Cancer Signalling NetworkWDR31
Wikipedia pathwaysWDR31
Orthology - Evolution
OrthoDB114987
GeneTree (enSembl)ENSG00000148225
Phylogenetic Trees/Animal Genes : TreeFamWDR31
HOGENOMQ8NA23
Homologs : HomoloGeneWDR31
Homology/Alignments : Family Browser (UCSC)WDR31
Gene fusions - Rearrangements
Fusion : QuiverWDR31
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR31 [hg38]
dbVarWDR31
ClinVarWDR31
MonarchWDR31
1000_GenomesWDR31 
Exome Variant ServerWDR31
GNOMAD BrowserENSG00000148225
Varsome BrowserWDR31
Genomic Variants (DGV)WDR31 [DGVbeta]
DECIPHERWDR31 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR31 
Mutations
ICGC Data PortalWDR31 
TCGA Data PortalWDR31 
Broad Tumor PortalWDR31
OASIS PortalWDR31 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR31  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DWDR31
Mutations and Diseases : HGMDWDR31
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR31
DgiDB (Drug Gene Interaction Database)WDR31
DoCM (Curated mutations)WDR31 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR31 (select a term)
intoGenWDR31
Cancer3DWDR31(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETWDR31
MedgenWDR31
Genetic Testing Registry WDR31
NextProtQ8NA23 [Medical]
GENETestsWDR31
Target ValidationWDR31
Huge Navigator WDR31 [HugePedia]
ClinGenWDR31
Clinical trials, drugs, therapy
MyCancerGenomeWDR31
Protein Interactions : CTD
Pharm GKB GenePA134959062
Clinical trialWDR31
Miscellaneous
canSAR (ICR)WDR31 (select the gene name)
HarmonizomeWDR31
DataMed IndexWDR31
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR31
EVEXWDR31
GoPubMedWDR31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:34:45 CET 2020

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