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WDR33 (WD repeat domain 33)

Identity

Alias_symbol (synonym)FLJ11294
WDC146
NET14
Other alias
HGNC (Hugo) WDR33
LocusID (NCBI) 55339
Atlas_Id 42806
Location 2q14.3  [Link to chromosome band 2q14]
Location_base_pair Starts at 127762486 and ends at 127811187 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COX6A1 (12q24.31) / WDR33 (2q14.3)FAM98C (19q13.2) / WDR33 (2q14.3)WDR33 (2q14.3) / CRBN (3p26.2)
WDR33 (2q14.3) / DARS (2q21.3)WDR33 (2q14.3) / GNAS (20q13.32)WDR33 (2q14.3) / RPLP1 (15q23)
WDR33 (2q14.3) / WDR33 (2q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR33   25651
Cards
Entrez_Gene (NCBI)WDR33  55339  WD repeat domain 33
AliasesNET14; WDC146
GeneCards (Weizmann)WDR33
Ensembl hg19 (Hinxton)ENSG00000136709 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136709 [Gene_View]  chr2:127762486-127811187 [Contig_View]  WDR33 [Vega]
ICGC DataPortalENSG00000136709
TCGA cBioPortalWDR33
AceView (NCBI)WDR33
Genatlas (Paris)WDR33
WikiGenes55339
SOURCE (Princeton)WDR33
Genetics Home Reference (NIH)WDR33
Genomic and cartography
GoldenPath hg38 (UCSC)WDR33  -     chr2:127762486-127811187 -  2q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR33  -     2q14.3   [Description]    (hg19-Feb_2009)
EnsemblWDR33 - 2q14.3 [CytoView hg19]  WDR33 - 2q14.3 [CytoView hg38]
Mapping of homologs : NCBIWDR33 [Mapview hg19]  WDR33 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA142986 AB044749 AI039494 AK002156 AK098003
RefSeq transcript (Entrez)NM_001006622 NM_001006623 NM_018383
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR33
Cluster EST : UnigeneHs.554831 [ NCBI ]
CGAP (NCI)Hs.554831
Alternative Splicing GalleryENSG00000136709
Gene ExpressionWDR33 [ NCBI-GEO ]   WDR33 [ EBI - ARRAY_EXPRESS ]   WDR33 [ SEEK ]   WDR33 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR33 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55339
GTEX Portal (Tissue expression)WDR33
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0J8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0J8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0J8
Splice isoforms : SwissVarQ9C0J8
PhosPhoSitePlusQ9C0J8
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR33
DMDM Disease mutations55339
Blocks (Seattle)WDR33
SuperfamilyQ9C0J8
Human Protein AtlasENSG00000136709
Peptide AtlasQ9C0J8
HPRD11680
IPIIPI00106567   IPI00385811   IPI00432450   IPI00917267   IPI00917459   
Protein Interaction databases
DIP (DOE-UCLA)Q9C0J8
IntAct (EBI)Q9C0J8
FunCoupENSG00000136709
BioGRIDWDR33
STRING (EMBL)WDR33
ZODIACWDR33
Ontologies - Pathways
QuickGOQ9C0J8
Ontology : AmiGOmRNA splicing, via spliceosome  fibrillar center  RNA binding  collagen trimer  nucleus  nucleoplasm  nucleoplasm  mRNA cleavage and polyadenylation specificity factor complex  postreplication repair  termination of RNA polymerase II transcription  mRNA cleavage  mRNA export from nucleus  spermatogenesis  mRNA 3'-end processing  
Ontology : EGO-EBImRNA splicing, via spliceosome  fibrillar center  RNA binding  collagen trimer  nucleus  nucleoplasm  nucleoplasm  mRNA cleavage and polyadenylation specificity factor complex  postreplication repair  termination of RNA polymerase II transcription  mRNA cleavage  mRNA export from nucleus  spermatogenesis  mRNA 3'-end processing  
Pathways : KEGGmRNA surveillance pathway   
NDEx NetworkWDR33
Atlas of Cancer Signalling NetworkWDR33
Wikipedia pathwaysWDR33
Orthology - Evolution
OrthoDB55339
GeneTree (enSembl)ENSG00000136709
Phylogenetic Trees/Animal Genes : TreeFamWDR33
HOVERGENQ9C0J8
HOGENOMQ9C0J8
Homologs : HomoloGeneWDR33
Homology/Alignments : Family Browser (UCSC)WDR33
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR33 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR33
dbVarWDR33
ClinVarWDR33
1000_GenomesWDR33 
Exome Variant ServerWDR33
ExAC (Exome Aggregation Consortium)WDR33 (select the gene name)
Genetic variants : HAPMAP55339
Genomic Variants (DGV)WDR33 [DGVbeta]
DECIPHERWDR33 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR33 
Mutations
ICGC Data PortalWDR33 
TCGA Data PortalWDR33 
Broad Tumor PortalWDR33
OASIS PortalWDR33 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR33  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR33
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR33
DgiDB (Drug Gene Interaction Database)WDR33
DoCM (Curated mutations)WDR33 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR33 (select a term)
intoGenWDR33
Cancer3DWDR33(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWDR33
Genetic Testing Registry WDR33
NextProtQ9C0J8 [Medical]
TSGene55339
GENETestsWDR33
Target ValidationWDR33
Huge Navigator WDR33 [HugePedia]
snp3D : Map Gene to Disease55339
BioCentury BCIQWDR33
ClinGenWDR33
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55339
Chemical/Pharm GKB GenePA134943440
Clinical trialWDR33
Miscellaneous
canSAR (ICR)WDR33 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR33
EVEXWDR33
GoPubMedWDR33
iHOPWDR33
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:18:52 CEST 2017

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