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WDR34 (WD repeat domain 34)

Identity

Alias_symbol (synonym)DIC5
MGC20486
bA216B9.3
FAP133
Other aliasSRTD11
HGNC (Hugo) WDR34
LocusID (NCBI) 89891
Atlas_Id 75707
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 128633661 and ends at 128656850 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KIAA1958 (9q32) / WDR34 (9q34.11)WDR34 (9q34.11) / ZER1 (9q34.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR34   28296
Cards
Entrez_Gene (NCBI)WDR34  89891  WD repeat domain 34
AliasesDIC5; FAP133; SRTD11; bA216B9.3
GeneCards (Weizmann)WDR34
Ensembl hg19 (Hinxton)ENSG00000119333 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119333 [Gene_View]  chr9:128633661-128656850 [Contig_View]  WDR34 [Vega]
ICGC DataPortalENSG00000119333
TCGA cBioPortalWDR34
AceView (NCBI)WDR34
Genatlas (Paris)WDR34
WikiGenes89891
SOURCE (Princeton)WDR34
Genetics Home Reference (NIH)WDR34
Genomic and cartography
GoldenPath hg38 (UCSC)WDR34  -     chr9:128633661-128656850 -  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR34  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblWDR34 - 9q34.11 [CytoView hg19]  WDR34 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBIWDR34 [Mapview hg19]  WDR34 [Mapview hg38]
OMIM613363   615633   
Gene and transcription
Genbank (Entrez)AK302098 AL555205 BC001614 BC011874 BG177634
RefSeq transcript (Entrez)NM_052844
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR34
Cluster EST : UnigeneHs.495240 [ NCBI ]
CGAP (NCI)Hs.495240
Alternative Splicing GalleryENSG00000119333
Gene ExpressionWDR34 [ NCBI-GEO ]   WDR34 [ EBI - ARRAY_EXPRESS ]   WDR34 [ SEEK ]   WDR34 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR34 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)89891
GTEX Portal (Tissue expression)WDR34
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EX3
Splice isoforms : SwissVarQ96EX3
PhosPhoSitePlusQ96EX3
Domaine pattern : Prosite (Expaxy)WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR34
DMDM Disease mutations89891
Blocks (Seattle)WDR34
SuperfamilyQ96EX3
Human Protein AtlasENSG00000119333
Peptide AtlasQ96EX3
HPRD15666
IPIIPI00306130   IPI00657823   IPI00657840   
Protein Interaction databases
DIP (DOE-UCLA)Q96EX3
IntAct (EBI)Q96EX3
FunCoupENSG00000119333
BioGRIDWDR34
STRING (EMBL)WDR34
ZODIACWDR34
Ontologies - Pathways
QuickGOQ96EX3
Ontology : AmiGOprotein binding  centriole  cytosol  cytoplasmic dynein complex  cilium  axoneme  intraciliary transport involved in cilium assembly  ciliary basal body  dynein light chain binding  cilium assembly  ciliary tip  
Ontology : EGO-EBIprotein binding  centriole  cytosol  cytoplasmic dynein complex  cilium  axoneme  intraciliary transport involved in cilium assembly  ciliary basal body  dynein light chain binding  cilium assembly  ciliary tip  
NDEx NetworkWDR34
Atlas of Cancer Signalling NetworkWDR34
Wikipedia pathwaysWDR34
Orthology - Evolution
OrthoDB89891
GeneTree (enSembl)ENSG00000119333
Phylogenetic Trees/Animal Genes : TreeFamWDR34
HOVERGENQ96EX3
HOGENOMQ96EX3
Homologs : HomoloGeneWDR34
Homology/Alignments : Family Browser (UCSC)WDR34
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR34
dbVarWDR34
ClinVarWDR34
1000_GenomesWDR34 
Exome Variant ServerWDR34
ExAC (Exome Aggregation Consortium)WDR34 (select the gene name)
Genetic variants : HAPMAP89891
Genomic Variants (DGV)WDR34 [DGVbeta]
DECIPHERWDR34 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR34 
Mutations
ICGC Data PortalWDR34 
TCGA Data PortalWDR34 
Broad Tumor PortalWDR34
OASIS PortalWDR34 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR34  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR34
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR34
DgiDB (Drug Gene Interaction Database)WDR34
DoCM (Curated mutations)WDR34 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR34 (select a term)
intoGenWDR34
Cancer3DWDR34(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613363    615633   
Orphanet283    12214   
MedgenWDR34
Genetic Testing Registry WDR34
NextProtQ96EX3 [Medical]
TSGene89891
GENETestsWDR34
Target ValidationWDR34
Huge Navigator WDR34 [HugePedia]
snp3D : Map Gene to Disease89891
BioCentury BCIQWDR34
ClinGenWDR34
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD89891
Chemical/Pharm GKB GenePA134951680
Clinical trialWDR34
Miscellaneous
canSAR (ICR)WDR34 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR34
EVEXWDR34
GoPubMedWDR34
iHOPWDR34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:46 CEST 2017

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