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WDR36 (WD repeat domain 36)

Identity

Alias (NCBI)GLC1G
TA-WDRP
TAWDRP
UTP21
HGNC (Hugo) WDR36
HGNC Alias symbTA-WDRP
UTP21
HGNC Previous nameGLC1G
HGNC Previous nameglaucoma 1, open angle, G
LocusID (NCBI) 134430
Atlas_Id 75709
Location 5q22.1  [Link to chromosome band 5q22]
Location_base_pair Starts at 111092172 and ends at 111130502 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
WDR36 (5q22.1) / NREP (5q22.1)cytochrome_b () / WDR36 (5q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)WDR36   30696
Cards
Entrez_Gene (NCBI)WDR36    WD repeat domain 36
AliasesGLC1G; TA-WDRP; TAWDRP; UTP21
GeneCards (Weizmann)WDR36
Ensembl hg19 (Hinxton)ENSG00000134987 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134987 [Gene_View]  ENSG00000134987 [Sequence]  chr5:111092172-111130502 [Contig_View]  WDR36 [Vega]
ICGC DataPortalENSG00000134987
TCGA cBioPortalWDR36
AceView (NCBI)WDR36
Genatlas (Paris)WDR36
SOURCE (Princeton)WDR36
Genetics Home Reference (NIH)WDR36
Genomic and cartography
GoldenPath hg38 (UCSC)WDR36  -     chr5:111092172-111130502 +  5q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR36  -     5q22.1   [Description]    (hg19-Feb_2009)
GoldenPathWDR36 - 5q22.1 [CytoView hg19]  WDR36 - 5q22.1 [CytoView hg38]
ImmunoBaseENSG00000134987
Genome Data Viewer NCBIWDR36 [Mapview hg19]  
OMIM609669   609887   
Gene and transcription
Genbank (Entrez)AF385437 AK055664 AK074202 AK095312 AL832494
RefSeq transcript (Entrez)NM_139281
Consensus coding sequences : CCDS (NCBI)WDR36
Gene ExpressionWDR36 [ NCBI-GEO ]   WDR36 [ EBI - ARRAY_EXPRESS ]   WDR36 [ SEEK ]   WDR36 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR36 [ Firebrowse - Broad ]
GenevisibleExpression of WDR36 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)134430
GTEX Portal (Tissue expression)WDR36
Human Protein AtlasENSG00000134987-WDR36 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NI36   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NI36  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NI36
PhosPhoSitePlusQ8NI36
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)Apc4_WD40_dom    SSU_processome_Utp21    WD40/YVTN_repeat-like_dom_sf    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom    WD40_repeat_dom_sf   
Domain families : Pfam (Sanger)ANAPC4_WD40 (PF12894)    Utp21 (PF04192)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam12894    pfam04192    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR36
SuperfamilyQ8NI36
AlphaFold pdb e-kbQ8NI36   
Human Protein Atlas [tissue]ENSG00000134987-WDR36 [tissue]
HPRD10305
Protein Interaction databases
DIP (DOE-UCLA)Q8NI36
IntAct (EBI)Q8NI36
BioGRIDWDR36
STRING (EMBL)WDR36
ZODIACWDR36
Ontologies - Pathways
QuickGOQ8NI36
Ontology : AmiGORNA binding  nucleoplasm  nucleolus  rRNA processing  rRNA processing  visual perception  biological_process  small-subunit processome  Pwp2p-containing subcomplex of 90S preribosome  response to stimulus  
Ontology : EGO-EBIRNA binding  nucleoplasm  nucleolus  rRNA processing  rRNA processing  visual perception  biological_process  small-subunit processome  Pwp2p-containing subcomplex of 90S preribosome  response to stimulus  
NDEx NetworkWDR36
Atlas of Cancer Signalling NetworkWDR36
Wikipedia pathwaysWDR36
Orthology - Evolution
OrthoDB134430
GeneTree (enSembl)ENSG00000134987
Phylogenetic Trees/Animal Genes : TreeFamWDR36
Homologs : HomoloGeneWDR36
Homology/Alignments : Family Browser (UCSC)WDR36
Gene fusions - Rearrangements
Fusion : QuiverWDR36
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR36 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR36
dbVarWDR36
ClinVarWDR36
MonarchWDR36
1000_GenomesWDR36 
Exome Variant ServerWDR36
GNOMAD BrowserENSG00000134987
Varsome BrowserWDR36
ACMGWDR36 variants
VarityQ8NI36
Genomic Variants (DGV)WDR36 [DGVbeta]
DECIPHERWDR36 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR36 
Mutations
ICGC Data PortalWDR36 
TCGA Data PortalWDR36 
Broad Tumor PortalWDR36
OASIS PortalWDR36 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR36  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DWDR36
Mutations and Diseases : HGMDWDR36
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaWDR36
DgiDB (Drug Gene Interaction Database)WDR36
DoCM (Curated mutations)WDR36
CIViC (Clinical Interpretations of Variants in Cancer)WDR36
Cancer3DWDR36
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609669    609887   
Orphanet
DisGeNETWDR36
MedgenWDR36
Genetic Testing Registry WDR36
NextProtQ8NI36 [Medical]
GENETestsWDR36
Target ValidationWDR36
Huge Navigator WDR36 [HugePedia]
ClinGenWDR36
Clinical trials, drugs, therapy
MyCancerGenomeWDR36
Protein Interactions : CTDWDR36
Pharm GKB GenePA134933637
PharosQ8NI36
Clinical trialWDR36
Miscellaneous
canSAR (ICR)WDR36
HarmonizomeWDR36
DataMed IndexWDR36
Probes
Litterature
PubMed87 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXWDR36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:28:26 CEST 2021

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