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WDR36 (WD repeat domain 36)

Identity

Alias_namesGLC1G
glaucoma 1, open angle, G
Alias_symbol (synonym)TA-WDRP
UTP21
Other aliasTAWDRP
HGNC (Hugo) WDR36
LocusID (NCBI) 134430
Atlas_Id 75709
Location 5q22.1  [Link to chromosome band 5q22]
Location_base_pair Starts at 110427870 and ends at 110466200 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
WDR36 (5q22.1) / NREP (5q22.1)cytochrome_b () / WDR36 (5q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR36   30696
Cards
Entrez_Gene (NCBI)WDR36  134430  WD repeat domain 36
AliasesGLC1G; TA-WDRP; TAWDRP; UTP21
GeneCards (Weizmann)WDR36
Ensembl hg19 (Hinxton)ENSG00000134987 [Gene_View]  chr5:110427870-110466200 [Contig_View]  WDR36 [Vega]
Ensembl hg38 (Hinxton)ENSG00000134987 [Gene_View]  chr5:110427870-110466200 [Contig_View]  WDR36 [Vega]
ICGC DataPortalENSG00000134987
TCGA cBioPortalWDR36
AceView (NCBI)WDR36
Genatlas (Paris)WDR36
WikiGenes134430
SOURCE (Princeton)WDR36
Genetics Home Reference (NIH)WDR36
Genomic and cartography
GoldenPath hg19 (UCSC)WDR36  -     chr5:110427870-110466200 +  5q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WDR36  -     5q22.1   [Description]    (hg38-Dec_2013)
EnsemblWDR36 - 5q22.1 [CytoView hg19]  WDR36 - 5q22.1 [CytoView hg38]
Mapping of homologs : NCBIWDR36 [Mapview hg19]  WDR36 [Mapview hg38]
OMIM609669   609887   
Gene and transcription
Genbank (Entrez)AF385437 AK055664 AK074202 AK095312 AL832494
RefSeq transcript (Entrez)NM_139281
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_008979 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)WDR36
Cluster EST : UnigeneHs.533237 [ NCBI ]
CGAP (NCI)Hs.533237
Alternative Splicing GalleryENSG00000134987
Gene ExpressionWDR36 [ NCBI-GEO ]   WDR36 [ EBI - ARRAY_EXPRESS ]   WDR36 [ SEEK ]   WDR36 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR36 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)134430
GTEX Portal (Tissue expression)WDR36
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NI36   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NI36  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NI36
Splice isoforms : SwissVarQ8NI36
PhosPhoSitePlusQ8NI36
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)SSU_processome_Utp21    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)Utp21 (PF04192)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam04192    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR36
DMDM Disease mutations134430
Blocks (Seattle)WDR36
SuperfamilyQ8NI36
Human Protein AtlasENSG00000134987
Peptide AtlasQ8NI36
HPRD10305
IPIIPI00169325   IPI00966980   IPI00965593   
Protein Interaction databases
DIP (DOE-UCLA)Q8NI36
IntAct (EBI)Q8NI36
FunCoupENSG00000134987
BioGRIDWDR36
STRING (EMBL)WDR36
ZODIACWDR36
Ontologies - Pathways
QuickGOQ8NI36
Ontology : AmiGOretina homeostasis  cellular_component  nucleolus  rRNA processing  visual perception  biological_process  regulation of axon extension  small-subunit processome  Pwp2p-containing subcomplex of 90S preribosome  poly(A) RNA binding  response to stimulus  
Ontology : EGO-EBIretina homeostasis  cellular_component  nucleolus  rRNA processing  visual perception  biological_process  regulation of axon extension  small-subunit processome  Pwp2p-containing subcomplex of 90S preribosome  poly(A) RNA binding  response to stimulus  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkWDR36
Atlas of Cancer Signalling NetworkWDR36
Wikipedia pathwaysWDR36
Orthology - Evolution
OrthoDB134430
GeneTree (enSembl)ENSG00000134987
Phylogenetic Trees/Animal Genes : TreeFamWDR36
HOVERGENQ8NI36
HOGENOMQ8NI36
Homologs : HomoloGeneWDR36
Homology/Alignments : Family Browser (UCSC)WDR36
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR36 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR36
dbVarWDR36
ClinVarWDR36
1000_GenomesWDR36 
Exome Variant ServerWDR36
ExAC (Exome Aggregation Consortium)WDR36 (select the gene name)
Genetic variants : HAPMAP134430
Genomic Variants (DGV)WDR36 [DGVbeta]
DECIPHER (Syndromes)5:110427870-110466200  ENSG00000134987
CONAN: Copy Number AnalysisWDR36 
Mutations
ICGC Data PortalWDR36 
TCGA Data PortalWDR36 
Broad Tumor PortalWDR36
OASIS PortalWDR36 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR36  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR36
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR36
DgiDB (Drug Gene Interaction Database)WDR36
DoCM (Curated mutations)WDR36 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR36 (select a term)
intoGenWDR36
Cancer3DWDR36(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609669    609887   
Orphanet
MedgenWDR36
Genetic Testing Registry WDR36
NextProtQ8NI36 [Medical]
TSGene134430
GENETestsWDR36
Huge Navigator WDR36 [HugePedia]
snp3D : Map Gene to Disease134430
BioCentury BCIQWDR36
ClinGenWDR36
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD134430
Chemical/Pharm GKB GenePA134933637
Clinical trialWDR36
Miscellaneous
canSAR (ICR)WDR36 (select the gene name)
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR36
EVEXWDR36
GoPubMedWDR36
iHOPWDR36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:35 CET 2017

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