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WDR38 (WD repeat domain 38)

Identity

Other alias-
HGNC (Hugo) WDR38
LocusID (NCBI) 401551
Atlas_Id 75711
Location 9q33.3  [Link to chromosome band 9q33]
Location_base_pair Starts at 124853417 and ends at 124857891 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR38   23745
Cards
Entrez_Gene (NCBI)WDR38  401551  WD repeat domain 38
Aliases
GeneCards (Weizmann)WDR38
Ensembl hg19 (Hinxton)ENSG00000136918 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136918 [Gene_View]  chr9:124853417-124857891 [Contig_View]  WDR38 [Vega]
ICGC DataPortalENSG00000136918
TCGA cBioPortalWDR38
AceView (NCBI)WDR38
Genatlas (Paris)WDR38
WikiGenes401551
SOURCE (Princeton)WDR38
Genetics Home Reference (NIH)WDR38
Genomic and cartography
GoldenPath hg38 (UCSC)WDR38  -     chr9:124853417-124857891 +  9q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR38  -     9q33.3   [Description]    (hg19-Feb_2009)
EnsemblWDR38 - 9q33.3 [CytoView hg19]  WDR38 - 9q33.3 [CytoView hg38]
Mapping of homologs : NCBIWDR38 [Mapview hg19]  WDR38 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA867995 BC127949 BC150645 BC171828 BC171830
RefSeq transcript (Entrez)NM_001045476 NM_001276374 NM_001276375 NM_001276376
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR38
Cluster EST : UnigeneHs.343383 [ NCBI ]
CGAP (NCI)Hs.343383
Alternative Splicing GalleryENSG00000136918
Gene ExpressionWDR38 [ NCBI-GEO ]   WDR38 [ EBI - ARRAY_EXPRESS ]   WDR38 [ SEEK ]   WDR38 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR38 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401551
GTEX Portal (Tissue expression)WDR38
Human Protein AtlasENSG00000136918-WDR38 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JTN6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JTN6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JTN6
Splice isoforms : SwissVarQ5JTN6
PhosPhoSitePlusQ5JTN6
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR38
DMDM Disease mutations401551
Blocks (Seattle)WDR38
SuperfamilyQ5JTN6
Human Protein Atlas [tissue]ENSG00000136918-WDR38 [tissue]
Peptide AtlasQ5JTN6
IPIIPI00740620   
Protein Interaction databases
DIP (DOE-UCLA)Q5JTN6
IntAct (EBI)Q5JTN6
FunCoupENSG00000136918
BioGRIDWDR38
STRING (EMBL)WDR38
ZODIACWDR38
Ontologies - Pathways
QuickGOQ5JTN6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkWDR38
Atlas of Cancer Signalling NetworkWDR38
Wikipedia pathwaysWDR38
Orthology - Evolution
OrthoDB401551
GeneTree (enSembl)ENSG00000136918
Phylogenetic Trees/Animal Genes : TreeFamWDR38
HOVERGENQ5JTN6
HOGENOMQ5JTN6
Homologs : HomoloGeneWDR38
Homology/Alignments : Family Browser (UCSC)WDR38
Gene fusions - Rearrangements
Fusion: Tumor Portal WDR38
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR38 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR38
dbVarWDR38
ClinVarWDR38
1000_GenomesWDR38 
Exome Variant ServerWDR38
ExAC (Exome Aggregation Consortium)ENSG00000136918
GNOMAD BrowserENSG00000136918
Genetic variants : HAPMAP401551
Genomic Variants (DGV)WDR38 [DGVbeta]
DECIPHERWDR38 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR38 
Mutations
ICGC Data PortalWDR38 
TCGA Data PortalWDR38 
Broad Tumor PortalWDR38
OASIS PortalWDR38 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR38  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR38
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch WDR38
DgiDB (Drug Gene Interaction Database)WDR38
DoCM (Curated mutations)WDR38 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR38 (select a term)
intoGenWDR38
Cancer3DWDR38(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWDR38
Genetic Testing Registry WDR38
NextProtQ5JTN6 [Medical]
TSGene401551
GENETestsWDR38
Target ValidationWDR38
Huge Navigator WDR38 [HugePedia]
snp3D : Map Gene to Disease401551
BioCentury BCIQWDR38
ClinGenWDR38
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401551
Chemical/Pharm GKB GenePA162409138
Clinical trialWDR38
Miscellaneous
canSAR (ICR)WDR38 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR38
EVEXWDR38
GoPubMedWDR38
iHOPWDR38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:35:44 CET 2017

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