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WDR41 (WD repeat domain 41)

Identity

Alias_symbol (synonym)FLJ10904
Other aliasMSTP048
HGNC (Hugo) WDR41
LocusID (NCBI) 55255
Atlas_Id 75713
Location 5q13.3  [Link to chromosome band 5q13]
Location_base_pair Starts at 76728069 and ends at 76788332 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TEAD1 (11p15.3) / WDR41 (5q13.3)WDR41 (5q13.3) / HMGCR (5q13.3)WDR41 (5q13.3) / WDR41 (5q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR41   25601
Cards
Entrez_Gene (NCBI)WDR41  55255  WD repeat domain 41
AliasesMSTP048
GeneCards (Weizmann)WDR41
Ensembl hg19 (Hinxton)ENSG00000164253 [Gene_View]  chr5:76728069-76788332 [Contig_View]  WDR41 [Vega]
Ensembl hg38 (Hinxton)ENSG00000164253 [Gene_View]  chr5:76728069-76788332 [Contig_View]  WDR41 [Vega]
ICGC DataPortalENSG00000164253
TCGA cBioPortalWDR41
AceView (NCBI)WDR41
Genatlas (Paris)WDR41
WikiGenes55255
SOURCE (Princeton)WDR41
Genetics Home Reference (NIH)WDR41
Genomic and cartography
GoldenPath hg19 (UCSC)WDR41  -     chr5:76728069-76788332 -  5q13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WDR41  -     5q13.3   [Description]    (hg38-Dec_2013)
EnsemblWDR41 - 5q13.3 [CytoView hg19]  WDR41 - 5q13.3 [CytoView hg38]
Mapping of homologs : NCBIWDR41 [Mapview hg19]  WDR41 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF115511 AK001766 AK021855 AK023977 AK293316
RefSeq transcript (Entrez)NM_018268
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929322
Consensus coding sequences : CCDS (NCBI)WDR41
Cluster EST : UnigeneHs.482573 [ NCBI ]
CGAP (NCI)Hs.482573
Alternative Splicing GalleryENSG00000164253
Gene ExpressionWDR41 [ NCBI-GEO ]   WDR41 [ EBI - ARRAY_EXPRESS ]   WDR41 [ SEEK ]   WDR41 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR41 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55255
GTEX Portal (Tissue expression)WDR41
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HAD4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HAD4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HAD4
Splice isoforms : SwissVarQ9HAD4
PhosPhoSitePlusQ9HAD4
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR41
DMDM Disease mutations55255
Blocks (Seattle)WDR41
SuperfamilyQ9HAD4
Human Protein AtlasENSG00000164253
Peptide AtlasQ9HAD4
HPRD07714
IPIIPI00306934   IPI00965751   IPI00908844   IPI00964818   IPI00964312   IPI00963917   IPI00964191   IPI00967215   IPI00964489   IPI00965187   IPI00968052   IPI00967568   IPI00967163   IPI00964588   IPI00967808   IPI00965692   IPI00966137   
Protein Interaction databases
DIP (DOE-UCLA)Q9HAD4
IntAct (EBI)Q9HAD4
FunCoupENSG00000164253
BioGRIDWDR41
STRING (EMBL)WDR41
ZODIACWDR41
Ontologies - Pathways
QuickGOQ9HAD4
Ontology : AmiGOlysosomal membrane  
Ontology : EGO-EBIlysosomal membrane  
NDEx NetworkWDR41
Atlas of Cancer Signalling NetworkWDR41
Wikipedia pathwaysWDR41
Orthology - Evolution
OrthoDB55255
GeneTree (enSembl)ENSG00000164253
Phylogenetic Trees/Animal Genes : TreeFamWDR41
HOVERGENQ9HAD4
HOGENOMQ9HAD4
Homologs : HomoloGeneWDR41
Homology/Alignments : Family Browser (UCSC)WDR41
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR41 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR41
dbVarWDR41
ClinVarWDR41
1000_GenomesWDR41 
Exome Variant ServerWDR41
ExAC (Exome Aggregation Consortium)WDR41 (select the gene name)
Genetic variants : HAPMAP55255
Genomic Variants (DGV)WDR41 [DGVbeta]
DECIPHER (Syndromes)5:76728069-76788332  ENSG00000164253
CONAN: Copy Number AnalysisWDR41 
Mutations
ICGC Data PortalWDR41 
TCGA Data PortalWDR41 
Broad Tumor PortalWDR41
OASIS PortalWDR41 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR41  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR41
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR41
DgiDB (Drug Gene Interaction Database)WDR41
DoCM (Curated mutations)WDR41 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR41 (select a term)
intoGenWDR41
Cancer3DWDR41(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWDR41
Genetic Testing Registry WDR41
NextProtQ9HAD4 [Medical]
TSGene55255
GENETestsWDR41
Huge Navigator WDR41 [HugePedia]
snp3D : Map Gene to Disease55255
BioCentury BCIQWDR41
ClinGenWDR41
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55255
Chemical/Pharm GKB GenePA134906058
Clinical trialWDR41
Miscellaneous
canSAR (ICR)WDR41 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR41
EVEXWDR41
GoPubMedWDR41
iHOPWDR41
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:35 CET 2017

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