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WDR44 (WD repeat domain 44)

Identity

Alias_symbol (synonym)DKFZp686L20145
RPH11
RAB11BP
Other alias
HGNC (Hugo) WDR44
LocusID (NCBI) 54521
Atlas_Id 75714
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 118346073 and ends at 118449960 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IL13RA1 (Xq24) / WDR44 (Xq24)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR44   30512
Cards
Entrez_Gene (NCBI)WDR44  54521  WD repeat domain 44
AliasesRAB11BP; RPH11
GeneCards (Weizmann)WDR44
Ensembl hg19 (Hinxton)ENSG00000131725 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131725 [Gene_View]  chrX:118346073-118449960 [Contig_View]  WDR44 [Vega]
ICGC DataPortalENSG00000131725
TCGA cBioPortalWDR44
AceView (NCBI)WDR44
Genatlas (Paris)WDR44
WikiGenes54521
SOURCE (Princeton)WDR44
Genetics Home Reference (NIH)WDR44
Genomic and cartography
GoldenPath hg38 (UCSC)WDR44  -     chrX:118346073-118449960 +  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR44  -     Xq24   [Description]    (hg19-Feb_2009)
EnsemblWDR44 - Xq24 [CytoView hg19]  WDR44 - Xq24 [CytoView hg38]
Mapping of homologs : NCBIWDR44 [Mapview hg19]  WDR44 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001978 AK023292 AK092077 AK127556 AK299711
RefSeq transcript (Entrez)NM_001184965 NM_001184966 NM_019045
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR44
Cluster EST : UnigeneHs.98510 [ NCBI ]
CGAP (NCI)Hs.98510
Alternative Splicing GalleryENSG00000131725
Gene ExpressionWDR44 [ NCBI-GEO ]   WDR44 [ EBI - ARRAY_EXPRESS ]   WDR44 [ SEEK ]   WDR44 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR44 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54521
GTEX Portal (Tissue expression)WDR44
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JSH3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JSH3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JSH3
Splice isoforms : SwissVarQ5JSH3
PhosPhoSitePlusQ5JSH3
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR44
DMDM Disease mutations54521
Blocks (Seattle)WDR44
SuperfamilyQ5JSH3
Human Protein AtlasENSG00000131725
Peptide AtlasQ5JSH3
HPRD11682
IPIIPI00444371   IPI00872729   IPI00807730   IPI00909478   IPI00639995   
Protein Interaction databases
DIP (DOE-UCLA)Q5JSH3
IntAct (EBI)Q5JSH3
FunCoupENSG00000131725
BioGRIDWDR44
STRING (EMBL)WDR44
ZODIACWDR44
Ontologies - Pathways
QuickGOQ5JSH3
Ontology : AmiGOGolgi apparatus  cytosol  endosome membrane  perinuclear region of cytoplasm  
Ontology : EGO-EBIGolgi apparatus  cytosol  endosome membrane  perinuclear region of cytoplasm  
NDEx NetworkWDR44
Atlas of Cancer Signalling NetworkWDR44
Wikipedia pathwaysWDR44
Orthology - Evolution
OrthoDB54521
GeneTree (enSembl)ENSG00000131725
Phylogenetic Trees/Animal Genes : TreeFamWDR44
HOVERGENQ5JSH3
HOGENOMQ5JSH3
Homologs : HomoloGeneWDR44
Homology/Alignments : Family Browser (UCSC)WDR44
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR44 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR44
dbVarWDR44
ClinVarWDR44
1000_GenomesWDR44 
Exome Variant ServerWDR44
ExAC (Exome Aggregation Consortium)WDR44 (select the gene name)
Genetic variants : HAPMAP54521
Genomic Variants (DGV)WDR44 [DGVbeta]
DECIPHERWDR44 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR44 
Mutations
ICGC Data PortalWDR44 
TCGA Data PortalWDR44 
Broad Tumor PortalWDR44
OASIS PortalWDR44 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR44  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR44
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch WDR44
DgiDB (Drug Gene Interaction Database)WDR44
DoCM (Curated mutations)WDR44 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR44 (select a term)
intoGenWDR44
Cancer3DWDR44(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWDR44
Genetic Testing Registry WDR44
NextProtQ5JSH3 [Medical]
TSGene54521
GENETestsWDR44
Huge Navigator WDR44 [HugePedia]
snp3D : Map Gene to Disease54521
BioCentury BCIQWDR44
ClinGenWDR44
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54521
Chemical/Pharm GKB GenePA128394668
Clinical trialWDR44
Miscellaneous
canSAR (ICR)WDR44 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR44
EVEXWDR44
GoPubMedWDR44
iHOPWDR44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:01:31 CEST 2017

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