Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

WDR47 (WD repeat domain 47)

Identity

Alias_symbol (synonym)KIAA0893
Other alias-
HGNC (Hugo) WDR47
LocusID (NCBI) 22911
Atlas_Id 75718
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 108970216 and ends at 109042228 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CRK (17p13.3) / WDR47 (1p13.3)RAB4A (1q42.13) / WDR47 (1p13.3)WDR47 (1p13.3) / C1orf194 (1p13.3)
WDR47 (1p13.3) / CCDC180 (9q22.33)WDR47 (1p13.3) / RP11-389E17.1 ()WDR47 (1p13.3) / WDR47 (1p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR47   29141
Cards
Entrez_Gene (NCBI)WDR47  22911  WD repeat domain 47
Aliases
GeneCards (Weizmann)WDR47
Ensembl hg19 (Hinxton)ENSG00000085433 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000085433 [Gene_View]  chr1:108970216-109042228 [Contig_View]  WDR47 [Vega]
ICGC DataPortalENSG00000085433
TCGA cBioPortalWDR47
AceView (NCBI)WDR47
Genatlas (Paris)WDR47
WikiGenes22911
SOURCE (Princeton)WDR47
Genetics Home Reference (NIH)WDR47
Genomic and cartography
GoldenPath hg38 (UCSC)WDR47  -     chr1:108970216-109042228 -  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR47  -     1p13.3   [Description]    (hg19-Feb_2009)
EnsemblWDR47 - 1p13.3 [CytoView hg19]  WDR47 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBIWDR47 [Mapview hg19]  WDR47 [Mapview hg38]
OMIM615734   
Gene and transcription
Genbank (Entrez)AB020700 AK074616 AK225781 AK289789 AK294998
RefSeq transcript (Entrez)NM_001142550 NM_001142551 NM_014969
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR47
Cluster EST : UnigeneHs.570055 [ NCBI ]
CGAP (NCI)Hs.570055
Alternative Splicing GalleryENSG00000085433
Gene ExpressionWDR47 [ NCBI-GEO ]   WDR47 [ EBI - ARRAY_EXPRESS ]   WDR47 [ SEEK ]   WDR47 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22911
GTEX Portal (Tissue expression)WDR47
Human Protein AtlasENSG00000085433-WDR47 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94967   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94967  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94967
Splice isoforms : SwissVarO94967
PhosPhoSitePlusO94967
Domaine pattern : Prosite (Expaxy)CTLH (PS50897)    LISH (PS50896)    WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)Apc4_WD40_dom    CTLH_C    LisH    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)ANAPC4_WD40 (PF12894)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam12894    pfam00400   
Domain families : Smart (EMBL)CTLH (SM00668)  LisH (SM00667)  WD40 (SM00320)  
Conserved Domain (NCBI)WDR47
DMDM Disease mutations22911
Blocks (Seattle)WDR47
SuperfamilyO94967
Human Protein Atlas [tissue]ENSG00000085433-WDR47 [tissue]
Peptide AtlasO94967
HPRD15670
IPIIPI00217629   IPI00479795   IPI00645640   IPI00916258   IPI00978668   IPI00985296   IPI00983421   IPI00977262   
Protein Interaction databases
DIP (DOE-UCLA)O94967
IntAct (EBI)O94967
FunCoupENSG00000085433
BioGRIDWDR47
STRING (EMBL)WDR47
ZODIACWDR47
Ontologies - Pathways
QuickGOO94967
Ontology : AmiGOprotein binding  cytoplasm  microtubule  multicellular organism development  
Ontology : EGO-EBIprotein binding  cytoplasm  microtubule  multicellular organism development  
NDEx NetworkWDR47
Atlas of Cancer Signalling NetworkWDR47
Wikipedia pathwaysWDR47
Orthology - Evolution
OrthoDB22911
GeneTree (enSembl)ENSG00000085433
Phylogenetic Trees/Animal Genes : TreeFamWDR47
HOVERGENO94967
HOGENOMO94967
Homologs : HomoloGeneWDR47
Homology/Alignments : Family Browser (UCSC)WDR47
Gene fusions - Rearrangements
Tumor Fusion PortalWDR47
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR47
dbVarWDR47
ClinVarWDR47
1000_GenomesWDR47 
Exome Variant ServerWDR47
ExAC (Exome Aggregation Consortium)ENSG00000085433
GNOMAD BrowserENSG00000085433
Genetic variants : HAPMAP22911
Genomic Variants (DGV)WDR47 [DGVbeta]
DECIPHERWDR47 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR47 
Mutations
ICGC Data PortalWDR47 
TCGA Data PortalWDR47 
Broad Tumor PortalWDR47
OASIS PortalWDR47 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR47  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR47
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR47
DgiDB (Drug Gene Interaction Database)WDR47
DoCM (Curated mutations)WDR47 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR47 (select a term)
intoGenWDR47
Cancer3DWDR47(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615734   
Orphanet
DisGeNETWDR47
MedgenWDR47
Genetic Testing Registry WDR47
NextProtO94967 [Medical]
TSGene22911
GENETestsWDR47
Target ValidationWDR47
Huge Navigator WDR47 [HugePedia]
snp3D : Map Gene to Disease22911
BioCentury BCIQWDR47
ClinGenWDR47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22911
Chemical/Pharm GKB GenePA134937302
Clinical trialWDR47
Miscellaneous
canSAR (ICR)WDR47 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR47
EVEXWDR47
GoPubMedWDR47
iHOPWDR47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:03:39 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.