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WDR49 (WD repeat domain 49)

Identity

Alias_symbol (synonym)FLJ33620
Other alias-
HGNC (Hugo) WDR49
LocusID (NCBI) 151790
Atlas_Id 75719
Location 3q26.1  [Link to chromosome band 3q26]
Location_base_pair Starts at 167196473 and ends at 167371289 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
WDR49 (3q26.1) / VEPH1 (3q25.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR49   26587
Cards
Entrez_Gene (NCBI)WDR49  151790  WD repeat domain 49
Aliases
GeneCards (Weizmann)WDR49
Ensembl hg19 (Hinxton)ENSG00000174776 [Gene_View]  chr3:167196473-167371289 [Contig_View]  WDR49 [Vega]
Ensembl hg38 (Hinxton)ENSG00000174776 [Gene_View]  chr3:167196473-167371289 [Contig_View]  WDR49 [Vega]
ICGC DataPortalENSG00000174776
TCGA cBioPortalWDR49
AceView (NCBI)WDR49
Genatlas (Paris)WDR49
WikiGenes151790
SOURCE (Princeton)WDR49
Genetics Home Reference (NIH)WDR49
Genomic and cartography
GoldenPath hg19 (UCSC)WDR49  -     chr3:167196473-167371289 -  3q26.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WDR49  -     3q26.1   [Description]    (hg38-Dec_2013)
EnsemblWDR49 - 3q26.1 [CytoView hg19]  WDR49 - 3q26.1 [CytoView hg38]
Mapping of homologs : NCBIWDR49 [Mapview hg19]  WDR49 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090939 AK097556 AK294387 BC035512 JF432224
RefSeq transcript (Entrez)NM_178824
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)WDR49
Cluster EST : UnigeneHs.213762 [ NCBI ]
CGAP (NCI)Hs.213762
Alternative Splicing GalleryENSG00000174776
Gene ExpressionWDR49 [ NCBI-GEO ]   WDR49 [ EBI - ARRAY_EXPRESS ]   WDR49 [ SEEK ]   WDR49 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR49 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151790
GTEX Portal (Tissue expression)WDR49
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IV35   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IV35  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IV35
Splice isoforms : SwissVarQ8IV35
PhosPhoSitePlusQ8IV35
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR49
DMDM Disease mutations151790
Blocks (Seattle)WDR49
SuperfamilyQ8IV35
Human Protein AtlasENSG00000174776
Peptide AtlasQ8IV35
HPRD08160
IPIIPI00216853   IPI00788807   IPI00908529   IPI00297990   IPI00947522   IPI00796565   IPI00947223   IPI00946405   IPI00797426   
Protein Interaction databases
DIP (DOE-UCLA)Q8IV35
IntAct (EBI)Q8IV35
FunCoupENSG00000174776
BioGRIDWDR49
STRING (EMBL)WDR49
ZODIACWDR49
Ontologies - Pathways
QuickGOQ8IV35
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkWDR49
Atlas of Cancer Signalling NetworkWDR49
Wikipedia pathwaysWDR49
Orthology - Evolution
OrthoDB151790
GeneTree (enSembl)ENSG00000174776
Phylogenetic Trees/Animal Genes : TreeFamWDR49
HOVERGENQ8IV35
HOGENOMQ8IV35
Homologs : HomoloGeneWDR49
Homology/Alignments : Family Browser (UCSC)WDR49
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR49 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR49
dbVarWDR49
ClinVarWDR49
1000_GenomesWDR49 
Exome Variant ServerWDR49
ExAC (Exome Aggregation Consortium)WDR49 (select the gene name)
Genetic variants : HAPMAP151790
Genomic Variants (DGV)WDR49 [DGVbeta]
DECIPHER (Syndromes)3:167196473-167371289  ENSG00000174776
CONAN: Copy Number AnalysisWDR49 
Mutations
ICGC Data PortalWDR49 
TCGA Data PortalWDR49 
Broad Tumor PortalWDR49
OASIS PortalWDR49 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR49  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR49
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR49
DgiDB (Drug Gene Interaction Database)WDR49
DoCM (Curated mutations)WDR49 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR49 (select a term)
intoGenWDR49
Cancer3DWDR49(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWDR49
Genetic Testing Registry WDR49
NextProtQ8IV35 [Medical]
TSGene151790
GENETestsWDR49
Huge Navigator WDR49 [HugePedia]
snp3D : Map Gene to Disease151790
BioCentury BCIQWDR49
ClinGenWDR49
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151790
Chemical/Pharm GKB GenePA134949512
Clinical trialWDR49
Miscellaneous
canSAR (ICR)WDR49 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR49
EVEXWDR49
GoPubMedWDR49
iHOPWDR49
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:37 CET 2017

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