Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

WDR54 (WD repeat domain 54)

Identity

Alias_symbol (synonym)FLJ12953
Other alias-
HGNC (Hugo) WDR54
LocusID (NCBI) 84058
Atlas_Id 75720
Location 2p13.1  [Link to chromosome band 2p13]
Location_base_pair Starts at 74421723 and ends at 74425755 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TSPAN17 (5q35.2) / WDR54 (2p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR54   25770
Cards
Entrez_Gene (NCBI)WDR54  84058  WD repeat domain 54
Aliases
GeneCards (Weizmann)WDR54
Ensembl hg19 (Hinxton)ENSG00000005448 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000005448 [Gene_View]  chr2:74421723-74425755 [Contig_View]  WDR54 [Vega]
ICGC DataPortalENSG00000005448
TCGA cBioPortalWDR54
AceView (NCBI)WDR54
Genatlas (Paris)WDR54
WikiGenes84058
SOURCE (Princeton)WDR54
Genetics Home Reference (NIH)WDR54
Genomic and cartography
GoldenPath hg38 (UCSC)WDR54  -     chr2:74421723-74425755 +  2p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR54  -     2p13.1   [Description]    (hg19-Feb_2009)
EnsemblWDR54 - 2p13.1 [CytoView hg19]  WDR54 - 2p13.1 [CytoView hg38]
Mapping of homologs : NCBIWDR54 [Mapview hg19]  WDR54 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI203710 AK023015 AK222696 AK311621 BC032428
RefSeq transcript (Entrez)NM_001320823 NM_001320824 NM_001320825 NM_032118
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR54
Cluster EST : UnigeneHs.643480 [ NCBI ]
CGAP (NCI)Hs.643480
Alternative Splicing GalleryENSG00000005448
Gene ExpressionWDR54 [ NCBI-GEO ]   WDR54 [ EBI - ARRAY_EXPRESS ]   WDR54 [ SEEK ]   WDR54 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR54 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84058
GTEX Portal (Tissue expression)WDR54
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H977   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H977  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H977
Splice isoforms : SwissVarQ9H977
PhosPhoSitePlusQ9H977
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR54
DMDM Disease mutations84058
Blocks (Seattle)WDR54
SuperfamilyQ9H977
Human Protein AtlasENSG00000005448
Peptide AtlasQ9H977
HPRD08577
IPIIPI00029811   IPI00915843   IPI00915987   
Protein Interaction databases
DIP (DOE-UCLA)Q9H977
IntAct (EBI)Q9H977
FunCoupENSG00000005448
BioGRIDWDR54
STRING (EMBL)WDR54
ZODIACWDR54
Ontologies - Pathways
QuickGOQ9H977
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkWDR54
Atlas of Cancer Signalling NetworkWDR54
Wikipedia pathwaysWDR54
Orthology - Evolution
OrthoDB84058
GeneTree (enSembl)ENSG00000005448
Phylogenetic Trees/Animal Genes : TreeFamWDR54
HOVERGENQ9H977
HOGENOMQ9H977
Homologs : HomoloGeneWDR54
Homology/Alignments : Family Browser (UCSC)WDR54
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR54 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR54
dbVarWDR54
ClinVarWDR54
1000_GenomesWDR54 
Exome Variant ServerWDR54
ExAC (Exome Aggregation Consortium)WDR54 (select the gene name)
Genetic variants : HAPMAP84058
Genomic Variants (DGV)WDR54 [DGVbeta]
DECIPHERWDR54 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR54 
Mutations
ICGC Data PortalWDR54 
TCGA Data PortalWDR54 
Broad Tumor PortalWDR54
OASIS PortalWDR54 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR54  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR54
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR54
DgiDB (Drug Gene Interaction Database)WDR54
DoCM (Curated mutations)WDR54 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR54 (select a term)
intoGenWDR54
Cancer3DWDR54(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWDR54
Genetic Testing Registry WDR54
NextProtQ9H977 [Medical]
TSGene84058
GENETestsWDR54
Huge Navigator WDR54 [HugePedia]
snp3D : Map Gene to Disease84058
BioCentury BCIQWDR54
ClinGenWDR54
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84058
Chemical/Pharm GKB GenePA142670589
Clinical trialWDR54
Miscellaneous
canSAR (ICR)WDR54 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR54
EVEXWDR54
GoPubMedWDR54
iHOPWDR54
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:01:32 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.