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WDR55 (WD repeat domain 55)

Identity

Alias_symbol (synonym)FLJ20195
FLJ21702
Other alias-
HGNC (Hugo) WDR55
LocusID (NCBI) 54853
Atlas_Id 53059
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140044384 and ends at 140050553 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ABCA5 (17q24.3) / WDR55 (5q31.3)WDR55 (5q31.3) / DND1 (5q31.3)WDR55 (5q31.3) / PPP1R15B (1q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Prostate tumors: an overview


External links

Nomenclature
HGNC (Hugo)WDR55   25971
Cards
Entrez_Gene (NCBI)WDR55  54853  WD repeat domain 55
Aliases
GeneCards (Weizmann)WDR55
Ensembl hg19 (Hinxton)ENSG00000120314 [Gene_View]  chr5:140044384-140050553 [Contig_View]  WDR55 [Vega]
Ensembl hg38 (Hinxton)ENSG00000120314 [Gene_View]  chr5:140044384-140050553 [Contig_View]  WDR55 [Vega]
ICGC DataPortalENSG00000120314
TCGA cBioPortalWDR55
AceView (NCBI)WDR55
Genatlas (Paris)WDR55
WikiGenes54853
SOURCE (Princeton)WDR55
Genetics Home Reference (NIH)WDR55
Genomic and cartography
GoldenPath hg19 (UCSC)WDR55  -     chr5:140044384-140050553 +  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WDR55  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblWDR55 - 5q31.3 [CytoView hg19]  WDR55 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIWDR55 [Mapview hg19]  WDR55 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA974187 AK000202 AK025355 AK056861 AK122862
RefSeq transcript (Entrez)NM_017706
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)WDR55
Cluster EST : UnigeneHs.286261 [ NCBI ]
CGAP (NCI)Hs.286261
Alternative Splicing GalleryENSG00000120314
Gene ExpressionWDR55 [ NCBI-GEO ]   WDR55 [ EBI - ARRAY_EXPRESS ]   WDR55 [ SEEK ]   WDR55 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR55 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54853
GTEX Portal (Tissue expression)WDR55
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6Y2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6Y2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6Y2
Splice isoforms : SwissVarQ9H6Y2
PhosPhoSitePlusQ9H6Y2
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom    WD_repeat_p55   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR55
DMDM Disease mutations54853
Blocks (Seattle)WDR55
SuperfamilyQ9H6Y2
Human Protein AtlasENSG00000120314
Peptide AtlasQ9H6Y2
HPRD08614
IPIIPI00302990   IPI00909147   IPI00964116   IPI00929643   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6Y2
IntAct (EBI)Q9H6Y2
FunCoupENSG00000120314
BioGRIDWDR55
STRING (EMBL)WDR55
ZODIACWDR55
Ontologies - Pathways
QuickGOQ9H6Y2
Ontology : AmiGOmolecular_function  cellular_component  nucleolus  cytoplasm  rRNA processing  biological_process  ribosomal large subunit biogenesis  
Ontology : EGO-EBImolecular_function  cellular_component  nucleolus  cytoplasm  rRNA processing  biological_process  ribosomal large subunit biogenesis  
NDEx NetworkWDR55
Atlas of Cancer Signalling NetworkWDR55
Wikipedia pathwaysWDR55
Orthology - Evolution
OrthoDB54853
GeneTree (enSembl)ENSG00000120314
Phylogenetic Trees/Animal Genes : TreeFamWDR55
HOVERGENQ9H6Y2
HOGENOMQ9H6Y2
Homologs : HomoloGeneWDR55
Homology/Alignments : Family Browser (UCSC)WDR55
Gene fusions - Rearrangements
Fusion : MitelmanWDR55/DND1 [5q31.3/5q31.3]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR55 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR55
dbVarWDR55
ClinVarWDR55
1000_GenomesWDR55 
Exome Variant ServerWDR55
ExAC (Exome Aggregation Consortium)WDR55 (select the gene name)
Genetic variants : HAPMAP54853
Genomic Variants (DGV)WDR55 [DGVbeta]
DECIPHER (Syndromes)5:140044384-140050553  ENSG00000120314
CONAN: Copy Number AnalysisWDR55 
Mutations
ICGC Data PortalWDR55 
TCGA Data PortalWDR55 
Broad Tumor PortalWDR55
OASIS PortalWDR55 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR55  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR55
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR55
DgiDB (Drug Gene Interaction Database)WDR55
DoCM (Curated mutations)WDR55 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR55 (select a term)
intoGenWDR55
Cancer3DWDR55(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWDR55
Genetic Testing Registry WDR55
NextProtQ9H6Y2 [Medical]
TSGene54853
GENETestsWDR55
Huge Navigator WDR55 [HugePedia]
snp3D : Map Gene to Disease54853
BioCentury BCIQWDR55
ClinGenWDR55
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54853
Chemical/Pharm GKB GenePA142670590
Clinical trialWDR55
Miscellaneous
canSAR (ICR)WDR55 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR55
EVEXWDR55
GoPubMedWDR55
iHOPWDR55
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:24:59 CEST 2017

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