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WDR66 (WD repeat domain 66)

Identity

Alias_symbol (synonym)MGC33630
CaM-IP4
Other aliasCFAP251
HGNC (Hugo) WDR66
LocusID (NCBI) 144406
Atlas_Id 53608
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 121918557 and ends at 121972068 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TMEM120B (12q24.31) / WDR66 (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR66   28506
Cards
Entrez_Gene (NCBI)WDR66  144406  WD repeat domain 66
AliasesCFAP251; CaM-IP4
GeneCards (Weizmann)WDR66
Ensembl hg19 (Hinxton)ENSG00000158023 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158023 [Gene_View]  chr12:121918557-121972068 [Contig_View]  WDR66 [Vega]
ICGC DataPortalENSG00000158023
TCGA cBioPortalWDR66
AceView (NCBI)WDR66
Genatlas (Paris)WDR66
WikiGenes144406
SOURCE (Princeton)WDR66
Genetics Home Reference (NIH)WDR66
Genomic and cartography
GoldenPath hg38 (UCSC)WDR66  -     chr12:121918557-121972068 +  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR66  -     12q24.31   [Description]    (hg19-Feb_2009)
EnsemblWDR66 - 12q24.31 [CytoView hg19]  WDR66 - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBIWDR66 [Mapview hg19]  WDR66 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA853421 AA858079 AK097102 AL833930 BC028421
RefSeq transcript (Entrez)NM_001178003 NM_144668
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR66
Cluster EST : UnigeneHs.709837 [ NCBI ]
CGAP (NCI)Hs.709837
Alternative Splicing GalleryENSG00000158023
Gene ExpressionWDR66 [ NCBI-GEO ]   WDR66 [ EBI - ARRAY_EXPRESS ]   WDR66 [ SEEK ]   WDR66 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR66 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144406
GTEX Portal (Tissue expression)WDR66
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBY9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBY9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBY9
Splice isoforms : SwissVarQ8TBY9
PhosPhoSitePlusQ8TBY9
Domaine pattern : Prosite (Expaxy)WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)EF-hand-dom_pair    Quinoprotein_ADH-like_supfam    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR66
DMDM Disease mutations144406
Blocks (Seattle)WDR66
SuperfamilyQ8TBY9
Human Protein AtlasENSG00000158023
Peptide AtlasQ8TBY9
HPRD14570
IPIIPI00792290   IPI00384694   IPI00152316   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBY9
IntAct (EBI)Q8TBY9
FunCoupENSG00000158023
BioGRIDWDR66
STRING (EMBL)WDR66
ZODIACWDR66
Ontologies - Pathways
QuickGOQ8TBY9
Ontology : AmiGOradial spoke stalk  cilium movement  cytoplasm  axoneme  motile cilium  
Ontology : EGO-EBIradial spoke stalk  cilium movement  cytoplasm  axoneme  motile cilium  
NDEx NetworkWDR66
Atlas of Cancer Signalling NetworkWDR66
Wikipedia pathwaysWDR66
Orthology - Evolution
OrthoDB144406
GeneTree (enSembl)ENSG00000158023
Phylogenetic Trees/Animal Genes : TreeFamWDR66
HOVERGENQ8TBY9
HOGENOMQ8TBY9
Homologs : HomoloGeneWDR66
Homology/Alignments : Family Browser (UCSC)WDR66
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR66 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR66
dbVarWDR66
ClinVarWDR66
1000_GenomesWDR66 
Exome Variant ServerWDR66
ExAC (Exome Aggregation Consortium)WDR66 (select the gene name)
Genetic variants : HAPMAP144406
Genomic Variants (DGV)WDR66 [DGVbeta]
DECIPHERWDR66 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR66 
Mutations
ICGC Data PortalWDR66 
TCGA Data PortalWDR66 
Broad Tumor PortalWDR66
OASIS PortalWDR66 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR66  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR66
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR66
DgiDB (Drug Gene Interaction Database)WDR66
DoCM (Curated mutations)WDR66 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR66 (select a term)
intoGenWDR66
Cancer3DWDR66(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWDR66
Genetic Testing Registry WDR66
NextProtQ8TBY9 [Medical]
TSGene144406
GENETestsWDR66
Target ValidationWDR66
Huge Navigator WDR66 [HugePedia]
snp3D : Map Gene to Disease144406
BioCentury BCIQWDR66
ClinGenWDR66
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144406
Chemical/Pharm GKB GenePA142670599
Clinical trialWDR66
Miscellaneous
canSAR (ICR)WDR66 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR66
EVEXWDR66
GoPubMedWDR66
iHOPWDR66
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:11:42 CEST 2017

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