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WDR7 (WD repeat domain 7)

Identity

Alias (NCBI)TRAG
HGNC (Hugo) WDR7
HGNC Alias symbKIAA0541
TRAG
LocusID (NCBI) 23335
Atlas_Id 75727
Location 18q21.31  [Link to chromosome band 18q21]
Location_base_pair Starts at 56651385 and ends at 57029805 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RPRD1A (18q12.2) / WDR7 (18q21.31)UBXN2B (8q12.1) / WDR7 (18q21.31)WDR7 (18q21.31) / CCBE1 (18q21.32)
WDR7 (18q21.31) / XRCC5 (2q35)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)WDR7   13490
Cards
Entrez_Gene (NCBI)WDR7    WD repeat domain 7
AliasesTRAG
GeneCards (Weizmann)WDR7
Ensembl hg19 (Hinxton)ENSG00000091157 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000091157 [Gene_View]  ENSG00000091157 [Sequence]  chr18:56651385-57029805 [Contig_View]  WDR7 [Vega]
ICGC DataPortalENSG00000091157
TCGA cBioPortalWDR7
AceView (NCBI)WDR7
Genatlas (Paris)WDR7
SOURCE (Princeton)WDR7
Genetics Home Reference (NIH)WDR7
Genomic and cartography
GoldenPath hg38 (UCSC)WDR7  -     chr18:56651385-57029805 +  18q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR7  -     18q21.31   [Description]    (hg19-Feb_2009)
GoldenPathWDR7 - 18q21.31 [CytoView hg19]  WDR7 - 18q21.31 [CytoView hg38]
ImmunoBaseENSG00000091157
Genome Data Viewer NCBIWDR7 [Mapview hg19]  
OMIM613473   
Gene and transcription
Genbank (Entrez)AB011113 AF188125 AK057141 AY099325 BC050352
RefSeq transcript (Entrez)NM_001382485 NM_001382487 NM_015285 NM_052834
Consensus coding sequences : CCDS (NCBI)WDR7
Gene ExpressionWDR7 [ NCBI-GEO ]   WDR7 [ EBI - ARRAY_EXPRESS ]   WDR7 [ SEEK ]   WDR7 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR7 [ Firebrowse - Broad ]
GenevisibleExpression of WDR7 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23335
GTEX Portal (Tissue expression)WDR7
Human Protein AtlasENSG00000091157-WDR7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y4E6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y4E6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y4E6
PhosPhoSitePlusQ9Y4E6
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)Quinoprotein_ADH-like_supfam    WD40/YVTN_repeat-like_dom_sf    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom    WD40_repeat_dom_sf   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR7
SuperfamilyQ9Y4E6
AlphaFold pdb e-kbQ9Y4E6   
Human Protein Atlas [tissue]ENSG00000091157-WDR7 [tissue]
HPRD10306
Protein Interaction databases
DIP (DOE-UCLA)Q9Y4E6
IntAct (EBI)Q9Y4E6
BioGRIDWDR7
STRING (EMBL)WDR7
ZODIACWDR7
Ontologies - Pathways
QuickGOQ9Y4E6
Ontology : AmiGOsynaptic vesicle  
Ontology : EGO-EBIsynaptic vesicle  
NDEx NetworkWDR7
Atlas of Cancer Signalling NetworkWDR7
Wikipedia pathwaysWDR7
Orthology - Evolution
OrthoDB23335
GeneTree (enSembl)ENSG00000091157
Phylogenetic Trees/Animal Genes : TreeFamWDR7
Homologs : HomoloGeneWDR7
Homology/Alignments : Family Browser (UCSC)WDR7
Gene fusions - Rearrangements
Fusion : QuiverWDR7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR7
dbVarWDR7
ClinVarWDR7
MonarchWDR7
1000_GenomesWDR7 
Exome Variant ServerWDR7
GNOMAD BrowserENSG00000091157
Varsome BrowserWDR7
ACMGWDR7 variants
VarityQ9Y4E6
Genomic Variants (DGV)WDR7 [DGVbeta]
DECIPHERWDR7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR7 
Mutations
ICGC Data PortalWDR7 
TCGA Data PortalWDR7 
Broad Tumor PortalWDR7
OASIS PortalWDR7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR7  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DWDR7
Mutations and Diseases : HGMDWDR7
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaWDR7
DgiDB (Drug Gene Interaction Database)WDR7
DoCM (Curated mutations)WDR7
CIViC (Clinical Interpretations of Variants in Cancer)WDR7
Cancer3DWDR7
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613473   
Orphanet
DisGeNETWDR7
MedgenWDR7
Genetic Testing Registry WDR7
NextProtQ9Y4E6 [Medical]
GENETestsWDR7
Target ValidationWDR7
Huge Navigator WDR7 [HugePedia]
ClinGenWDR7
Clinical trials, drugs, therapy
MyCancerGenomeWDR7
Protein Interactions : CTDWDR7
Pharm GKB GenePA37784
PharosQ9Y4E6
Clinical trialWDR7
Miscellaneous
canSAR (ICR)WDR7
HarmonizomeWDR7
DataMed IndexWDR7
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXWDR7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:28:29 CEST 2021

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