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WDR7 (WD repeat domain 7)

Identity

Alias_symbol (synonym)KIAA0541
TRAG
Other alias
HGNC (Hugo) WDR7
LocusID (NCBI) 23335
Atlas_Id 75727
Location 18q21.31  [Link to chromosome band 18q21]
Location_base_pair Starts at 56651385 and ends at 57029805 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RPRD1A (18q12.2) / WDR7 (18q21.31)UBXN2B (8q12.1) / WDR7 (18q21.31)WDR7 (18q21.31) / CCBE1 (18q21.32)
WDR7 (18q21.31) / XRCC5 (2q35)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR7   13490
Cards
Entrez_Gene (NCBI)WDR7  23335  WD repeat domain 7
AliasesTRAG
GeneCards (Weizmann)WDR7
Ensembl hg19 (Hinxton)ENSG00000091157 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000091157 [Gene_View]  chr18:56651385-57029805 [Contig_View]  WDR7 [Vega]
ICGC DataPortalENSG00000091157
TCGA cBioPortalWDR7
AceView (NCBI)WDR7
Genatlas (Paris)WDR7
WikiGenes23335
SOURCE (Princeton)WDR7
Genetics Home Reference (NIH)WDR7
Genomic and cartography
GoldenPath hg38 (UCSC)WDR7  -     chr18:56651385-57029805 +  18q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR7  -     18q21.31   [Description]    (hg19-Feb_2009)
EnsemblWDR7 - 18q21.31 [CytoView hg19]  WDR7 - 18q21.31 [CytoView hg38]
Mapping of homologs : NCBIWDR7 [Mapview hg19]  WDR7 [Mapview hg38]
OMIM613473   
Gene and transcription
Genbank (Entrez)AB011113 AF188125 AK057141 AY099325 BC050352
RefSeq transcript (Entrez)NM_015285 NM_052834
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR7
Cluster EST : UnigeneHs.465213 [ NCBI ]
CGAP (NCI)Hs.465213
Alternative Splicing GalleryENSG00000091157
Gene ExpressionWDR7 [ NCBI-GEO ]   WDR7 [ EBI - ARRAY_EXPRESS ]   WDR7 [ SEEK ]   WDR7 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23335
GTEX Portal (Tissue expression)WDR7
Human Protein AtlasENSG00000091157-WDR7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y4E6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y4E6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y4E6
Splice isoforms : SwissVarQ9Y4E6
PhosPhoSitePlusQ9Y4E6
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)Quinoprotein_ADH-like_supfam    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR7
DMDM Disease mutations23335
Blocks (Seattle)WDR7
SuperfamilyQ9Y4E6
Human Protein Atlas [tissue]ENSG00000091157-WDR7 [tissue]
Peptide AtlasQ9Y4E6
HPRD10306
IPIIPI00328832   IPI00289815   IPI00829807   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y4E6
IntAct (EBI)Q9Y4E6
FunCoupENSG00000091157
BioGRIDWDR7
STRING (EMBL)WDR7
ZODIACWDR7
Ontologies - Pathways
QuickGOQ9Y4E6
Ontology : AmiGOhematopoietic progenitor cell differentiation  cytoplasm  synaptic vesicle  
Ontology : EGO-EBIhematopoietic progenitor cell differentiation  cytoplasm  synaptic vesicle  
NDEx NetworkWDR7
Atlas of Cancer Signalling NetworkWDR7
Wikipedia pathwaysWDR7
Orthology - Evolution
OrthoDB23335
GeneTree (enSembl)ENSG00000091157
Phylogenetic Trees/Animal Genes : TreeFamWDR7
HOVERGENQ9Y4E6
HOGENOMQ9Y4E6
Homologs : HomoloGeneWDR7
Homology/Alignments : Family Browser (UCSC)WDR7
Gene fusions - Rearrangements
Tumor Fusion PortalWDR7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR7
dbVarWDR7
ClinVarWDR7
1000_GenomesWDR7 
Exome Variant ServerWDR7
ExAC (Exome Aggregation Consortium)ENSG00000091157
GNOMAD BrowserENSG00000091157
Genetic variants : HAPMAP23335
Genomic Variants (DGV)WDR7 [DGVbeta]
DECIPHERWDR7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR7 
Mutations
ICGC Data PortalWDR7 
TCGA Data PortalWDR7 
Broad Tumor PortalWDR7
OASIS PortalWDR7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR7
DgiDB (Drug Gene Interaction Database)WDR7
DoCM (Curated mutations)WDR7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR7 (select a term)
intoGenWDR7
Cancer3DWDR7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613473   
Orphanet
DisGeNETWDR7
MedgenWDR7
Genetic Testing Registry WDR7
NextProtQ9Y4E6 [Medical]
TSGene23335
GENETestsWDR7
Target ValidationWDR7
Huge Navigator WDR7 [HugePedia]
snp3D : Map Gene to Disease23335
BioCentury BCIQWDR7
ClinGenWDR7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23335
Chemical/Pharm GKB GenePA37784
Clinical trialWDR7
Miscellaneous
canSAR (ICR)WDR7 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR7
EVEXWDR7
GoPubMedWDR7
iHOPWDR7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:38:01 CET 2017

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