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WDR72 (WD repeat domain 72)

Identity

Alias_symbol (synonym)FLJ38736
Other aliasAI2A3
HGNC (Hugo) WDR72
LocusID (NCBI) 256764
Atlas_Id 54780
Location 15q21.3  [Link to chromosome band 15q21]
Location_base_pair Starts at 53513741 and ends at 53541103 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SCAMP2 (15q24.1) / WDR72 (15q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR72   26790
Cards
Entrez_Gene (NCBI)WDR72  256764  WD repeat domain 72
AliasesAI2A3
GeneCards (Weizmann)WDR72
Ensembl hg19 (Hinxton)ENSG00000166415 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166415 [Gene_View]  chr15:53513741-53541103 [Contig_View]  WDR72 [Vega]
ICGC DataPortalENSG00000166415
TCGA cBioPortalWDR72
AceView (NCBI)WDR72
Genatlas (Paris)WDR72
WikiGenes256764
SOURCE (Princeton)WDR72
Genetics Home Reference (NIH)WDR72
Genomic and cartography
GoldenPath hg38 (UCSC)WDR72  -     chr15:53513741-53541103 -  15q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR72  -     15q21.3   [Description]    (hg19-Feb_2009)
EnsemblWDR72 - 15q21.3 [CytoView hg19]  WDR72 - 15q21.3 [CytoView hg38]
Mapping of homologs : NCBIWDR72 [Mapview hg19]  WDR72 [Mapview hg38]
OMIM613211   613214   
Gene and transcription
Genbank (Entrez)AK096055 AK123805 AK125130 AK310211 AK311300
RefSeq transcript (Entrez)NM_001277176 NM_182758
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR72
Cluster EST : UnigeneHs.122125 [ NCBI ]
CGAP (NCI)Hs.122125
Alternative Splicing GalleryENSG00000166415
Gene ExpressionWDR72 [ NCBI-GEO ]   WDR72 [ EBI - ARRAY_EXPRESS ]   WDR72 [ SEEK ]   WDR72 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR72 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256764
GTEX Portal (Tissue expression)WDR72
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3MJ13   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3MJ13  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3MJ13
Splice isoforms : SwissVarQ3MJ13
PhosPhoSitePlusQ3MJ13
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR72
DMDM Disease mutations256764
Blocks (Seattle)WDR72
SuperfamilyQ3MJ13
Human Protein AtlasENSG00000166415
Peptide AtlasQ3MJ13
HPRD10987
IPIIPI00375927   
Protein Interaction databases
DIP (DOE-UCLA)Q3MJ13
IntAct (EBI)Q3MJ13
FunCoupENSG00000166415
BioGRIDWDR72
STRING (EMBL)WDR72
ZODIACWDR72
Ontologies - Pathways
QuickGOQ3MJ13
Ontology : AmiGOcytoplasm  endosome  enamel mineralization  
Ontology : EGO-EBIcytoplasm  endosome  enamel mineralization  
NDEx NetworkWDR72
Atlas of Cancer Signalling NetworkWDR72
Wikipedia pathwaysWDR72
Orthology - Evolution
OrthoDB256764
GeneTree (enSembl)ENSG00000166415
Phylogenetic Trees/Animal Genes : TreeFamWDR72
HOVERGENQ3MJ13
HOGENOMQ3MJ13
Homologs : HomoloGeneWDR72
Homology/Alignments : Family Browser (UCSC)WDR72
Gene fusions - Rearrangements
Fusion : MitelmanSCAMP2/WDR72 [15q24.1/15q21.3]  [t(15;15)(q21;q24)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR72 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR72
dbVarWDR72
ClinVarWDR72
1000_GenomesWDR72 
Exome Variant ServerWDR72
ExAC (Exome Aggregation Consortium)WDR72 (select the gene name)
Genetic variants : HAPMAP256764
Genomic Variants (DGV)WDR72 [DGVbeta]
DECIPHERWDR72 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR72 
Mutations
ICGC Data PortalWDR72 
TCGA Data PortalWDR72 
Broad Tumor PortalWDR72
OASIS PortalWDR72 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR72  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR72
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR72
DgiDB (Drug Gene Interaction Database)WDR72
DoCM (Curated mutations)WDR72 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR72 (select a term)
intoGenWDR72
Cancer3DWDR72(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613211    613214   
Orphanet14606   
MedgenWDR72
Genetic Testing Registry WDR72
NextProtQ3MJ13 [Medical]
TSGene256764
GENETestsWDR72
Target ValidationWDR72
Huge Navigator WDR72 [HugePedia]
snp3D : Map Gene to Disease256764
BioCentury BCIQWDR72
ClinGenWDR72
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256764
Chemical/Pharm GKB GenePA142670587
Clinical trialWDR72
Miscellaneous
canSAR (ICR)WDR72 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR72
EVEXWDR72
GoPubMedWDR72
iHOPWDR72
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:02:49 CEST 2017

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