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WDR75 (WD repeat domain 75)

Identity

Alias_symbol (synonym)FLJ12519
NET16
UTP17
Other alias
HGNC (Hugo) WDR75
LocusID (NCBI) 84128
Atlas_Id 75730
Location 2q32.2  [Link to chromosome band 2q32]
Location_base_pair Starts at 190306159 and ends at 190340288 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NRP1 (10p11.22) / WDR75 (2q32.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR75   25725
Cards
Entrez_Gene (NCBI)WDR75  84128  WD repeat domain 75
AliasesNET16; UTP17
GeneCards (Weizmann)WDR75
Ensembl hg19 (Hinxton)ENSG00000115368 [Gene_View]  chr2:190306159-190340288 [Contig_View]  WDR75 [Vega]
Ensembl hg38 (Hinxton)ENSG00000115368 [Gene_View]  chr2:190306159-190340288 [Contig_View]  WDR75 [Vega]
ICGC DataPortalENSG00000115368
TCGA cBioPortalWDR75
AceView (NCBI)WDR75
Genatlas (Paris)WDR75
WikiGenes84128
SOURCE (Princeton)WDR75
Genetics Home Reference (NIH)WDR75
Genomic and cartography
GoldenPath hg19 (UCSC)WDR75  -     chr2:190306159-190340288 +  2q32.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WDR75  -     2q32.2   [Description]    (hg38-Dec_2013)
EnsemblWDR75 - 2q32.2 [CytoView hg19]  WDR75 - 2q32.2 [CytoView hg38]
Mapping of homologs : NCBIWDR75 [Mapview hg19]  WDR75 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022581 AK022607 AK023276 AK091546 AK290445
RefSeq transcript (Entrez)NM_001303096 NM_032168
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)WDR75
Cluster EST : UnigeneHs.399984 [ NCBI ]
CGAP (NCI)Hs.399984
Alternative Splicing GalleryENSG00000115368
Gene ExpressionWDR75 [ NCBI-GEO ]   WDR75 [ EBI - ARRAY_EXPRESS ]   WDR75 [ SEEK ]   WDR75 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR75 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84128
GTEX Portal (Tissue expression)WDR75
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWA0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWA0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWA0
Splice isoforms : SwissVarQ8IWA0
PhosPhoSitePlusQ8IWA0
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)Quinonprotein_ADH-like_supfam    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR75
DMDM Disease mutations84128
Blocks (Seattle)WDR75
SuperfamilyQ8IWA0
Human Protein AtlasENSG00000115368
Peptide AtlasQ8IWA0
HPRD07775
IPIIPI00217240   IPI00917653   IPI00916375   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWA0
IntAct (EBI)Q8IWA0
FunCoupENSG00000115368
BioGRIDWDR75
STRING (EMBL)WDR75
ZODIACWDR75
Ontologies - Pathways
QuickGOQ8IWA0
Ontology : AmiGOnucleoplasm  nucleolus  poly(A) RNA binding  regulation of mitochondrion degradation  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBInucleoplasm  nucleolus  poly(A) RNA binding  regulation of mitochondrion degradation  positive regulation of protein targeting to mitochondrion  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkWDR75
Atlas of Cancer Signalling NetworkWDR75
Wikipedia pathwaysWDR75
Orthology - Evolution
OrthoDB84128
GeneTree (enSembl)ENSG00000115368
Phylogenetic Trees/Animal Genes : TreeFamWDR75
HOVERGENQ8IWA0
HOGENOMQ8IWA0
Homologs : HomoloGeneWDR75
Homology/Alignments : Family Browser (UCSC)WDR75
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR75 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR75
dbVarWDR75
ClinVarWDR75
1000_GenomesWDR75 
Exome Variant ServerWDR75
ExAC (Exome Aggregation Consortium)WDR75 (select the gene name)
Genetic variants : HAPMAP84128
Genomic Variants (DGV)WDR75 [DGVbeta]
DECIPHER (Syndromes)2:190306159-190340288  ENSG00000115368
CONAN: Copy Number AnalysisWDR75 
Mutations
ICGC Data PortalWDR75 
TCGA Data PortalWDR75 
Broad Tumor PortalWDR75
OASIS PortalWDR75 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR75  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR75
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR75
DgiDB (Drug Gene Interaction Database)WDR75
DoCM (Curated mutations)WDR75 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR75 (select a term)
intoGenWDR75
Cancer3DWDR75(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWDR75
Genetic Testing Registry WDR75
NextProtQ8IWA0 [Medical]
TSGene84128
GENETestsWDR75
Huge Navigator WDR75 [HugePedia]
snp3D : Map Gene to Disease84128
BioCentury BCIQWDR75
ClinGenWDR75
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84128
Chemical/Pharm GKB GenePA142670579
Clinical trialWDR75
Miscellaneous
canSAR (ICR)WDR75 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR75
EVEXWDR75
GoPubMedWDR75
iHOPWDR75
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:39 CET 2017

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