Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

WDR76 (WD repeat domain 76)

Identity

Alias_symbol (synonym)FLJ12973
Other aliasCDW14
HGNC (Hugo) WDR76
LocusID (NCBI) 79968
Atlas_Id 45581
Location 15q15.3  [Link to chromosome band 15q15]
Location_base_pair Starts at 43826914 and ends at 43868419 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RPL5 (1p22.1) / WDR76 (15q15.3)WDR76 (15q15.3) / C14orf1 (14q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR76   25773
Cards
Entrez_Gene (NCBI)WDR76  79968  WD repeat domain 76
AliasesCDW14
GeneCards (Weizmann)WDR76
Ensembl hg19 (Hinxton)ENSG00000092470 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000092470 [Gene_View]  chr15:43826914-43868419 [Contig_View]  WDR76 [Vega]
ICGC DataPortalENSG00000092470
TCGA cBioPortalWDR76
AceView (NCBI)WDR76
Genatlas (Paris)WDR76
WikiGenes79968
SOURCE (Princeton)WDR76
Genetics Home Reference (NIH)WDR76
Genomic and cartography
GoldenPath hg38 (UCSC)WDR76  -     chr15:43826914-43868419 +  15q15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR76  -     15q15.3   [Description]    (hg19-Feb_2009)
EnsemblWDR76 - 15q15.3 [CytoView hg19]  WDR76 - 15q15.3 [CytoView hg38]
Mapping of homologs : NCBIWDR76 [Mapview hg19]  WDR76 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA743653 AA810149 AK023035 AK290933 BC025247
RefSeq transcript (Entrez)NM_001167941 NM_024908
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR76
Cluster EST : UnigeneHs.250154 [ NCBI ]
CGAP (NCI)Hs.250154
Alternative Splicing GalleryENSG00000092470
Gene ExpressionWDR76 [ NCBI-GEO ]   WDR76 [ EBI - ARRAY_EXPRESS ]   WDR76 [ SEEK ]   WDR76 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR76 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79968
GTEX Portal (Tissue expression)WDR76
Human Protein AtlasENSG00000092470-WDR76 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H967   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H967  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H967
Splice isoforms : SwissVarQ9H967
PhosPhoSitePlusQ9H967
Domains : Interpro (EBI)Cmr1/WDR76    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR76
DMDM Disease mutations79968
Blocks (Seattle)WDR76
SuperfamilyQ9H967
Human Protein Atlas [tissue]ENSG00000092470-WDR76 [tissue]
Peptide AtlasQ9H967
HPRD07804
IPIIPI00016542   IPI00852995   IPI00853041   
Protein Interaction databases
DIP (DOE-UCLA)Q9H967
IntAct (EBI)Q9H967
FunCoupENSG00000092470
BioGRIDWDR76
STRING (EMBL)WDR76
ZODIACWDR76
Ontologies - Pathways
QuickGOQ9H967
Ontology : AmiGOcellular response to DNA damage stimulus  
Ontology : EGO-EBIcellular response to DNA damage stimulus  
NDEx NetworkWDR76
Atlas of Cancer Signalling NetworkWDR76
Wikipedia pathwaysWDR76
Orthology - Evolution
OrthoDB79968
GeneTree (enSembl)ENSG00000092470
Phylogenetic Trees/Animal Genes : TreeFamWDR76
HOVERGENQ9H967
HOGENOMQ9H967
Homologs : HomoloGeneWDR76
Homology/Alignments : Family Browser (UCSC)WDR76
Gene fusions - Rearrangements
Tumor Fusion PortalWDR76
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR76 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR76
dbVarWDR76
ClinVarWDR76
1000_GenomesWDR76 
Exome Variant ServerWDR76
ExAC (Exome Aggregation Consortium)ENSG00000092470
GNOMAD BrowserENSG00000092470
Genetic variants : HAPMAP79968
Genomic Variants (DGV)WDR76 [DGVbeta]
DECIPHERWDR76 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR76 
Mutations
ICGC Data PortalWDR76 
TCGA Data PortalWDR76 
Broad Tumor PortalWDR76
OASIS PortalWDR76 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR76  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR76
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR76
DgiDB (Drug Gene Interaction Database)WDR76
DoCM (Curated mutations)WDR76 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR76 (select a term)
intoGenWDR76
Cancer3DWDR76(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETWDR76
MedgenWDR76
Genetic Testing Registry WDR76
NextProtQ9H967 [Medical]
TSGene79968
GENETestsWDR76
Target ValidationWDR76
Huge Navigator WDR76 [HugePedia]
snp3D : Map Gene to Disease79968
BioCentury BCIQWDR76
ClinGenWDR76
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79968
Chemical/Pharm GKB GenePA142670580
Clinical trialWDR76
Miscellaneous
canSAR (ICR)WDR76 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR76
EVEXWDR76
GoPubMedWDR76
iHOPWDR76
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:41:39 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.