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WDR78 (WD repeat domain 78)

Identity

Alias_symbol (synonym)DIC4
FLJ23129
Other alias
HGNC (Hugo) WDR78
LocusID (NCBI) 79819
Atlas_Id 75731
Location 1p31.3  [Link to chromosome band 1p31]
Location_base_pair Starts at 66812886 and ends at 66924887 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
WDR78 (1p31.3) / LRRC40 (1p31.1)WDR78 (1p31.3) / WDR78 (1p31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR78   26252
Cards
Entrez_Gene (NCBI)WDR78  79819  WD repeat domain 78
AliasesDIC4
GeneCards (Weizmann)WDR78
Ensembl hg19 (Hinxton)ENSG00000152763 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152763 [Gene_View]  chr1:66812886-66924887 [Contig_View]  WDR78 [Vega]
ICGC DataPortalENSG00000152763
TCGA cBioPortalWDR78
AceView (NCBI)WDR78
Genatlas (Paris)WDR78
WikiGenes79819
SOURCE (Princeton)WDR78
Genetics Home Reference (NIH)WDR78
Genomic and cartography
GoldenPath hg38 (UCSC)WDR78  -     chr1:66812886-66924887 -  1p31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR78  -     1p31.3   [Description]    (hg19-Feb_2009)
EnsemblWDR78 - 1p31.3 [CytoView hg19]  WDR78 - 1p31.3 [CytoView hg38]
Mapping of homologs : NCBIWDR78 [Mapview hg19]  WDR78 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026782 AK091603 AK127011 AK292830 AL133617
RefSeq transcript (Entrez)NM_024763 NM_207014
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR78
Cluster EST : UnigeneHs.49421 [ NCBI ]
CGAP (NCI)Hs.49421
Alternative Splicing GalleryENSG00000152763
Gene ExpressionWDR78 [ NCBI-GEO ]   WDR78 [ EBI - ARRAY_EXPRESS ]   WDR78 [ SEEK ]   WDR78 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR78 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79819
GTEX Portal (Tissue expression)WDR78
Human Protein AtlasENSG00000152763-WDR78 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VTH9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VTH9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VTH9
Splice isoforms : SwissVarQ5VTH9
PhosPhoSitePlusQ5VTH9
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR78
DMDM Disease mutations79819
Blocks (Seattle)WDR78
SuperfamilyQ5VTH9
Human Protein Atlas [tissue]ENSG00000152763-WDR78 [tissue]
Peptide AtlasQ5VTH9
HPRD08017
IPIIPI00410163   IPI00807680   IPI00983858   IPI00954844   IPI00642020   IPI00978470   IPI00979110   IPI00975778   IPI00981757   IPI00980432   
Protein Interaction databases
DIP (DOE-UCLA)Q5VTH9
IntAct (EBI)Q5VTH9
FunCoupENSG00000152763
BioGRIDWDR78
STRING (EMBL)WDR78
ZODIACWDR78
Ontologies - Pathways
QuickGOQ5VTH9
Ontology : AmiGOhematopoietic progenitor cell differentiation  
Ontology : EGO-EBIhematopoietic progenitor cell differentiation  
NDEx NetworkWDR78
Atlas of Cancer Signalling NetworkWDR78
Wikipedia pathwaysWDR78
Orthology - Evolution
OrthoDB79819
GeneTree (enSembl)ENSG00000152763
Phylogenetic Trees/Animal Genes : TreeFamWDR78
HOVERGENQ5VTH9
HOGENOMQ5VTH9
Homologs : HomoloGeneWDR78
Homology/Alignments : Family Browser (UCSC)WDR78
Gene fusions - Rearrangements
Fusion: Tumor Portal WDR78
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR78 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR78
dbVarWDR78
ClinVarWDR78
1000_GenomesWDR78 
Exome Variant ServerWDR78
ExAC (Exome Aggregation Consortium)ENSG00000152763
GNOMAD BrowserENSG00000152763
Genetic variants : HAPMAP79819
Genomic Variants (DGV)WDR78 [DGVbeta]
DECIPHERWDR78 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR78 
Mutations
ICGC Data PortalWDR78 
TCGA Data PortalWDR78 
Broad Tumor PortalWDR78
OASIS PortalWDR78 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR78  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR78
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR78
DgiDB (Drug Gene Interaction Database)WDR78
DoCM (Curated mutations)WDR78 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR78 (select a term)
intoGenWDR78
Cancer3DWDR78(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWDR78
Genetic Testing Registry WDR78
NextProtQ5VTH9 [Medical]
TSGene79819
GENETestsWDR78
Target ValidationWDR78
Huge Navigator WDR78 [HugePedia]
snp3D : Map Gene to Disease79819
BioCentury BCIQWDR78
ClinGenWDR78
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79819
Chemical/Pharm GKB GenePA142670582
Clinical trialWDR78
Miscellaneous
canSAR (ICR)WDR78 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR78
EVEXWDR78
GoPubMedWDR78
iHOPWDR78
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:35:47 CET 2017

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