Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

WDR82 (WD repeat domain 82)

Identity

Alias_namesTMEM113
transmembrane protein 113
Alias_symbol (synonym)PRO2730
MST107
MSTP107
PRO34047
WDR82A
SWD2
Other alias
HGNC (Hugo) WDR82
LocusID (NCBI) 80335
Atlas_Id 75733
Location 3p21.2  [Link to chromosome band 3p21]
Location_base_pair Starts at 52254422 and ends at 52278643 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PROSC (8p11.23) / WDR82 (3p21.2)WDR82 (3p21.2) / NT5DC2 (3p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR82   28826
Cards
Entrez_Gene (NCBI)WDR82  80335  WD repeat domain 82
AliasesMST107; MSTP107; PRO2730; PRO34047; 
SWD2; TMEM113; WDR82A
GeneCards (Weizmann)WDR82
Ensembl hg19 (Hinxton)ENSG00000164091 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164091 [Gene_View]  chr3:52254422-52278643 [Contig_View]  WDR82 [Vega]
ICGC DataPortalENSG00000164091
TCGA cBioPortalWDR82
AceView (NCBI)WDR82
Genatlas (Paris)WDR82
WikiGenes80335
SOURCE (Princeton)WDR82
Genetics Home Reference (NIH)WDR82
Genomic and cartography
GoldenPath hg38 (UCSC)WDR82  -     chr3:52254422-52278643 -  3p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR82  -     3p21.2   [Description]    (hg19-Feb_2009)
EnsemblWDR82 - 3p21.2 [CytoView hg19]  WDR82 - 3p21.2 [CytoView hg38]
Mapping of homologs : NCBIWDR82 [Mapview hg19]  WDR82 [Mapview hg38]
OMIM611059   
Gene and transcription
Genbank (Entrez)AF132207 AF173977 AI478905 AK074290 AK098435
RefSeq transcript (Entrez)NM_025222
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR82
Cluster EST : UnigeneHs.194110 [ NCBI ]
CGAP (NCI)Hs.194110
Alternative Splicing GalleryENSG00000164091
Gene ExpressionWDR82 [ NCBI-GEO ]   WDR82 [ EBI - ARRAY_EXPRESS ]   WDR82 [ SEEK ]   WDR82 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR82 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80335
GTEX Portal (Tissue expression)WDR82
Human Protein AtlasENSG00000164091-WDR82 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXN9
Splice isoforms : SwissVarQ6UXN9
PhosPhoSitePlusQ6UXN9
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR82
DMDM Disease mutations80335
Blocks (Seattle)WDR82
SuperfamilyQ6UXN9
Human Protein Atlas [tissue]ENSG00000164091-WDR82 [tissue]
Peptide AtlasQ6UXN9
HPRD15183
IPIIPI00152695   IPI00947344   IPI00797468   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXN9
IntAct (EBI)Q6UXN9
FunCoupENSG00000164091
BioGRIDWDR82
STRING (EMBL)WDR82
ZODIACWDR82
Ontologies - Pathways
QuickGOQ6UXN9
Ontology : AmiGOnuclear chromosome, telomeric region  chromatin  chromatin binding  protein binding  nucleolus  histone methyltransferase complex  histone methyltransferase activity (H3-K4 specific)  Set1C/COMPASS complex  histone H3-K4 methylation  PTW/PP1 phosphatase complex  histone H3-K4 trimethylation  
Ontology : EGO-EBInuclear chromosome, telomeric region  chromatin  chromatin binding  protein binding  nucleolus  histone methyltransferase complex  histone methyltransferase activity (H3-K4 specific)  Set1C/COMPASS complex  histone H3-K4 methylation  PTW/PP1 phosphatase complex  histone H3-K4 trimethylation  
Pathways : KEGGmRNA surveillance pathway   
NDEx NetworkWDR82
Atlas of Cancer Signalling NetworkWDR82
Wikipedia pathwaysWDR82
Orthology - Evolution
OrthoDB80335
GeneTree (enSembl)ENSG00000164091
Phylogenetic Trees/Animal Genes : TreeFamWDR82
HOVERGENQ6UXN9
HOGENOMQ6UXN9
Homologs : HomoloGeneWDR82
Homology/Alignments : Family Browser (UCSC)WDR82
Gene fusions - Rearrangements
Fusion: Tumor Portal WDR82
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR82 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR82
dbVarWDR82
ClinVarWDR82
1000_GenomesWDR82 
Exome Variant ServerWDR82
ExAC (Exome Aggregation Consortium)ENSG00000164091
GNOMAD BrowserENSG00000164091
Genetic variants : HAPMAP80335
Genomic Variants (DGV)WDR82 [DGVbeta]
DECIPHERWDR82 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR82 
Mutations
ICGC Data PortalWDR82 
TCGA Data PortalWDR82 
Broad Tumor PortalWDR82
OASIS PortalWDR82 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR82  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR82
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR82
DgiDB (Drug Gene Interaction Database)WDR82
DoCM (Curated mutations)WDR82 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR82 (select a term)
intoGenWDR82
Cancer3DWDR82(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611059   
Orphanet
MedgenWDR82
Genetic Testing Registry WDR82
NextProtQ6UXN9 [Medical]
TSGene80335
GENETestsWDR82
Target ValidationWDR82
Huge Navigator WDR82 [HugePedia]
snp3D : Map Gene to Disease80335
BioCentury BCIQWDR82
ClinGenWDR82
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80335
Chemical/Pharm GKB GenePA142670585
Clinical trialWDR82
Miscellaneous
canSAR (ICR)WDR82 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR82
EVEXWDR82
GoPubMedWDR82
iHOPWDR82
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:35:47 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.