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WDR82 (WD repeat domain 82)

Identity

Alias (NCBI)MST107
MSTP107
PRO2730
PRO34047
SWD2
TMEM113
WDR82A
HGNC (Hugo) WDR82
HGNC Alias symbPRO2730
MST107
MSTP107
PRO34047
WDR82A
SWD2
HGNC Previous nameTMEM113
HGNC Previous nametransmembrane protein 113
LocusID (NCBI) 80335
Atlas_Id 75733
Location 3p21.2  [Link to chromosome band 3p21]
Location_base_pair Starts at 52254434 and ends at 52278649 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PROSC (8p11.23) / WDR82 (3p21.2)WDR82 (3p21.2) / NT5DC2 (3p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)WDR82   28826
Cards
Entrez_Gene (NCBI)WDR82    WD repeat domain 82
AliasesMST107; MSTP107; PRO2730; PRO34047; 
SWD2; TMEM113; WDR82A
GeneCards (Weizmann)WDR82
Ensembl hg19 (Hinxton)ENSG00000164091 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164091 [Gene_View]  ENSG00000164091 [Sequence]  chr3:52254434-52278649 [Contig_View]  WDR82 [Vega]
ICGC DataPortalENSG00000164091
TCGA cBioPortalWDR82
AceView (NCBI)WDR82
Genatlas (Paris)WDR82
SOURCE (Princeton)WDR82
Genetics Home Reference (NIH)WDR82
Genomic and cartography
GoldenPath hg38 (UCSC)WDR82  -     chr3:52254434-52278649 -  3p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR82  -     3p21.2   [Description]    (hg19-Feb_2009)
GoldenPathWDR82 - 3p21.2 [CytoView hg19]  WDR82 - 3p21.2 [CytoView hg38]
ImmunoBaseENSG00000164091
Genome Data Viewer NCBIWDR82 [Mapview hg19]  
OMIM611059   
Gene and transcription
Genbank (Entrez)AF132207 AF173977 AI478905 AK074290 AK098435
RefSeq transcript (Entrez)NM_025222
Consensus coding sequences : CCDS (NCBI)WDR82
Gene ExpressionWDR82 [ NCBI-GEO ]   WDR82 [ EBI - ARRAY_EXPRESS ]   WDR82 [ SEEK ]   WDR82 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR82 [ Firebrowse - Broad ]
GenevisibleExpression of WDR82 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80335
GTEX Portal (Tissue expression)WDR82
Human Protein AtlasENSG00000164091-WDR82 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXN9
PhosPhoSitePlusQ6UXN9
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    Swd2/WDR82    WD40/YVTN_repeat-like_dom_sf    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom    WD40_repeat_dom_sf   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR82
SuperfamilyQ6UXN9
AlphaFold pdb e-kbQ6UXN9   
Human Protein Atlas [tissue]ENSG00000164091-WDR82 [tissue]
HPRD15183
Protein Interaction databases
DIP (DOE-UCLA)Q6UXN9
IntAct (EBI)Q6UXN9
BioGRIDWDR82
STRING (EMBL)WDR82
ZODIACWDR82
Ontologies - Pathways
QuickGOQ6UXN9
Ontology : AmiGOchromosome, telomeric region  chromatin  chromatin binding  protein binding  nucleolus  histone methyltransferase complex  histone methyltransferase activity (H3-K4 specific)  histone methyltransferase activity (H3-K4 specific)  Set1C/COMPASS complex  Set1C/COMPASS complex  histone H3-K4 methylation  PTW/PP1 phosphatase complex  histone H3-K4 trimethylation  
Ontology : EGO-EBIchromosome, telomeric region  chromatin  chromatin binding  protein binding  nucleolus  histone methyltransferase complex  histone methyltransferase activity (H3-K4 specific)  histone methyltransferase activity (H3-K4 specific)  Set1C/COMPASS complex  Set1C/COMPASS complex  histone H3-K4 methylation  PTW/PP1 phosphatase complex  histone H3-K4 trimethylation  
NDEx NetworkWDR82
Atlas of Cancer Signalling NetworkWDR82
Wikipedia pathwaysWDR82
Orthology - Evolution
OrthoDB80335
GeneTree (enSembl)ENSG00000164091
Phylogenetic Trees/Animal Genes : TreeFamWDR82
Homologs : HomoloGeneWDR82
Homology/Alignments : Family Browser (UCSC)WDR82
Gene fusions - Rearrangements
Fusion : QuiverWDR82
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR82 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR82
dbVarWDR82
ClinVarWDR82
MonarchWDR82
1000_GenomesWDR82 
Exome Variant ServerWDR82
GNOMAD BrowserENSG00000164091
Varsome BrowserWDR82
ACMGWDR82 variants
VarityQ6UXN9
Genomic Variants (DGV)WDR82 [DGVbeta]
DECIPHERWDR82 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR82 
Mutations
ICGC Data PortalWDR82 
TCGA Data PortalWDR82 
Broad Tumor PortalWDR82
OASIS PortalWDR82 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR82  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DWDR82
Mutations and Diseases : HGMDWDR82
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaWDR82
DgiDB (Drug Gene Interaction Database)WDR82
DoCM (Curated mutations)WDR82
CIViC (Clinical Interpretations of Variants in Cancer)WDR82
Cancer3DWDR82
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611059   
Orphanet
DisGeNETWDR82
MedgenWDR82
Genetic Testing Registry WDR82
NextProtQ6UXN9 [Medical]
GENETestsWDR82
Target ValidationWDR82
Huge Navigator WDR82 [HugePedia]
ClinGenWDR82
Clinical trials, drugs, therapy
MyCancerGenomeWDR82
Protein Interactions : CTDWDR82
Pharm GKB GenePA142670585
PharosQ6UXN9
Clinical trialWDR82
Miscellaneous
canSAR (ICR)WDR82
HarmonizomeWDR82
DataMed IndexWDR82
Probes
Litterature
PubMed74 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXWDR82
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:28:29 CEST 2021

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