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WDR83 (WD repeat domain 83)

Identity

Alias_symbol (synonym)MORG1
Other alias
HGNC (Hugo) WDR83
LocusID (NCBI) 84292
Atlas_Id 49957
Location 19p13.13  [Link to chromosome band 19p13]
Location_base_pair Starts at 12666804 and ends at 12675832 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PRKDC (8q11.21) / WDR83 (19p13.2)WDR83 (19p13.2) / DHPS (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR83   32672
Cards
Entrez_Gene (NCBI)WDR83  84292  WD repeat domain 83
AliasesMORG1
GeneCards (Weizmann)WDR83
Ensembl hg19 (Hinxton)ENSG00000123154 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123154 [Gene_View]  chr19:12666804-12675832 [Contig_View]  WDR83 [Vega]
ICGC DataPortalENSG00000123154
TCGA cBioPortalWDR83
AceView (NCBI)WDR83
Genatlas (Paris)WDR83
WikiGenes84292
SOURCE (Princeton)WDR83
Genetics Home Reference (NIH)WDR83
Genomic and cartography
GoldenPath hg38 (UCSC)WDR83  -     chr19:12666804-12675832 +  19p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR83  -     19p13.13   [Description]    (hg19-Feb_2009)
EnsemblWDR83 - 19p13.13 [CytoView hg19]  WDR83 - 19p13.13 [CytoView hg38]
Mapping of homologs : NCBIWDR83 [Mapview hg19]  WDR83 [Mapview hg38]
OMIM616850   
Gene and transcription
Genbank (Entrez)AK074525 AK223195 AK314164 BC005870 CB143206
RefSeq transcript (Entrez)NM_001099737 NM_032332
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR83
Cluster EST : UnigeneHs.657204 [ NCBI ]
CGAP (NCI)Hs.657204
Alternative Splicing GalleryENSG00000123154
Gene ExpressionWDR83 [ NCBI-GEO ]   WDR83 [ EBI - ARRAY_EXPRESS ]   WDR83 [ SEEK ]   WDR83 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR83 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84292
GTEX Portal (Tissue expression)WDR83
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRX9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRX9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRX9
Splice isoforms : SwissVarQ9BRX9
PhosPhoSitePlusQ9BRX9
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR83
DMDM Disease mutations84292
Blocks (Seattle)WDR83
SuperfamilyQ9BRX9
Human Protein AtlasENSG00000123154
Peptide AtlasQ9BRX9
HPRD14730
IPIIPI00031581   IPI01021482   IPI01022371   IPI01022209   IPI01022044   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRX9
IntAct (EBI)Q9BRX9
FunCoupENSG00000123154
BioGRIDWDR83
STRING (EMBL)WDR83
ZODIACWDR83
Ontologies - Pathways
QuickGOQ9BRX9
Ontology : AmiGOMAPK cascade  RNA splicing, via transesterification reactions  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  protein binding  spliceosomal complex  endosome membrane  catalytic step 2 spliceosome  
Ontology : EGO-EBIMAPK cascade  RNA splicing, via transesterification reactions  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  protein binding  spliceosomal complex  endosome membrane  catalytic step 2 spliceosome  
NDEx NetworkWDR83
Atlas of Cancer Signalling NetworkWDR83
Wikipedia pathwaysWDR83
Orthology - Evolution
OrthoDB84292
GeneTree (enSembl)ENSG00000123154
Phylogenetic Trees/Animal Genes : TreeFamWDR83
HOVERGENQ9BRX9
HOGENOMQ9BRX9
Homologs : HomoloGeneWDR83
Homology/Alignments : Family Browser (UCSC)WDR83
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR83 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR83
dbVarWDR83
ClinVarWDR83
1000_GenomesWDR83 
Exome Variant ServerWDR83
ExAC (Exome Aggregation Consortium)WDR83 (select the gene name)
Genetic variants : HAPMAP84292
Genomic Variants (DGV)WDR83 [DGVbeta]
DECIPHERWDR83 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR83 
Mutations
ICGC Data PortalWDR83 
TCGA Data PortalWDR83 
Broad Tumor PortalWDR83
OASIS PortalWDR83 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR83  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR83
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR83
DgiDB (Drug Gene Interaction Database)WDR83
DoCM (Curated mutations)WDR83 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR83 (select a term)
intoGenWDR83
Cancer3DWDR83(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616850   
Orphanet
MedgenWDR83
Genetic Testing Registry WDR83
NextProtQ9BRX9 [Medical]
TSGene84292
GENETestsWDR83
Target ValidationWDR83
Huge Navigator WDR83 [HugePedia]
snp3D : Map Gene to Disease84292
BioCentury BCIQWDR83
ClinGenWDR83
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84292
Chemical/Pharm GKB GenePA165394765
Clinical trialWDR83
Miscellaneous
canSAR (ICR)WDR83 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR83
EVEXWDR83
GoPubMedWDR83
iHOPWDR83
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:18:55 CEST 2017

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