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WDR83OS (WD repeat domain 83 opposite strand)

Identity

Alias_namesC19orf56
chromosome 19 open reading frame 56
Alias_symbol (synonym)PTD008
Other aliasASTERIX
HGNC (Hugo) WDR83OS
LocusID (NCBI) 51398
Atlas_Id 75734
Location 19p13.13  [Link to chromosome band 19p13]
Location_base_pair Starts at 12668067 and ends at 12669651 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)WDR83OS   30203
Cards
Entrez_Gene (NCBI)WDR83OS  51398  WD repeat domain 83 opposite strand
AliasesASTERIX; C19orf56; PTD008
GeneCards (Weizmann)WDR83OS
Ensembl hg19 (Hinxton)ENSG00000105583 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105583 [Gene_View]  ENSG00000105583 [Sequence]  chr19:12668067-12669651 [Contig_View]  WDR83OS [Vega]
ICGC DataPortalENSG00000105583
TCGA cBioPortalWDR83OS
AceView (NCBI)WDR83OS
Genatlas (Paris)WDR83OS
WikiGenes51398
SOURCE (Princeton)WDR83OS
Genetics Home Reference (NIH)WDR83OS
Genomic and cartography
GoldenPath hg38 (UCSC)WDR83OS  -     chr19:12668067-12669651 -  19p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR83OS  -     19p13.13   [Description]    (hg19-Feb_2009)
GoldenPathWDR83OS - 19p13.13 [CytoView hg19]  WDR83OS - 19p13.13 [CytoView hg38]
ImmunoBaseENSG00000105583
Mapping of homologs : NCBIWDR83OS [Mapview hg19]  WDR83OS [Mapview hg38]
OMIM618474   
Gene and transcription
Genbank (Entrez)AA694460 AF059620 AF078861 AF151898 AK091030
RefSeq transcript (Entrez)NM_016145
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR83OS
Cluster EST : UnigeneHs.657204 [ NCBI ]
CGAP (NCI)Hs.657204
Alternative Splicing GalleryENSG00000105583
Gene ExpressionWDR83OS [ NCBI-GEO ]   WDR83OS [ EBI - ARRAY_EXPRESS ]   WDR83OS [ SEEK ]   WDR83OS [ MEM ]
Gene Expression Viewer (FireBrowse)WDR83OS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51398
GTEX Portal (Tissue expression)WDR83OS
Human Protein AtlasENSG00000105583-WDR83OS [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y284   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y284  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y284
Splice isoforms : SwissVarQ9Y284
PhosPhoSitePlusQ9Y284
Domains : Interpro (EBI)UPF0139   
Domain families : Pfam (Sanger)UPF0139 (PF03669)   
Domain families : Pfam (NCBI)pfam03669   
Domain structure : Prodom (Prabi Lyon)UPF0139 (PD073147)   
Conserved Domain (NCBI)WDR83OS
DMDM Disease mutations51398
Blocks (Seattle)WDR83OS
SuperfamilyQ9Y284
Human Protein Atlas [tissue]ENSG00000105583-WDR83OS [tissue]
Peptide AtlasQ9Y284
HPRD17922
IPIIPI00031819   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y284
IntAct (EBI)Q9Y284
FunCoupENSG00000105583
BioGRIDWDR83OS
STRING (EMBL)WDR83OS
ZODIACWDR83OS
Ontologies - Pathways
QuickGOQ9Y284
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkWDR83OS
Atlas of Cancer Signalling NetworkWDR83OS
Wikipedia pathwaysWDR83OS
Orthology - Evolution
OrthoDB51398
GeneTree (enSembl)ENSG00000105583
Phylogenetic Trees/Animal Genes : TreeFamWDR83OS
HOGENOMQ9Y284
Homologs : HomoloGeneWDR83OS
Homology/Alignments : Family Browser (UCSC)WDR83OS
Gene fusions - Rearrangements
Fusion : QuiverWDR83OS
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR83OS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR83OS
dbVarWDR83OS
ClinVarWDR83OS
1000_GenomesWDR83OS 
Exome Variant ServerWDR83OS
ExAC (Exome Aggregation Consortium)ENSG00000105583
GNOMAD BrowserENSG00000105583
Varsome BrowserWDR83OS
Genetic variants : HAPMAP51398
Genomic Variants (DGV)WDR83OS [DGVbeta]
DECIPHERWDR83OS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR83OS 
Mutations
ICGC Data PortalWDR83OS 
TCGA Data PortalWDR83OS 
Broad Tumor PortalWDR83OS
OASIS PortalWDR83OS [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDWDR83OS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR83OS
DgiDB (Drug Gene Interaction Database)WDR83OS
DoCM (Curated mutations)WDR83OS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR83OS (select a term)
intoGenWDR83OS
Cancer3DWDR83OS(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618474   
Orphanet
DisGeNETWDR83OS
MedgenWDR83OS
Genetic Testing Registry WDR83OS
NextProtQ9Y284 [Medical]
TSGene51398
GENETestsWDR83OS
Target ValidationWDR83OS
Huge Navigator WDR83OS [HugePedia]
snp3D : Map Gene to Disease51398
BioCentury BCIQWDR83OS
ClinGenWDR83OS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51398
Chemical/Pharm GKB GenePA162378666
Clinical trialWDR83OS
Miscellaneous
canSAR (ICR)WDR83OS (select the gene name)
DataMed IndexWDR83OS
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR83OS
EVEXWDR83OS
GoPubMedWDR83OS
iHOPWDR83OS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:12:56 CEST 2019
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