Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

WDR87 (WD repeat domain 87)

Identity

Alias_symbol (synonym)NYD-SP11
Other alias
HGNC (Hugo) WDR87
LocusID (NCBI) 83889
Atlas_Id 75737
Location 19q13.13  [Link to chromosome band 19q13]
Location_base_pair Starts at 37884823 and ends at 37906706 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
WDR87 (19q13.13) / TREH (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)WDR87   29934
Cards
Entrez_Gene (NCBI)WDR87  83889  WD repeat domain 87
AliasesNYD-SP11
GeneCards (Weizmann)WDR87
Ensembl hg19 (Hinxton)ENSG00000171804 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171804 [Gene_View]  ENSG00000171804 [Sequence]  chr19:37884823-37906706 [Contig_View]  WDR87 [Vega]
ICGC DataPortalENSG00000171804
TCGA cBioPortalWDR87
AceView (NCBI)WDR87
Genatlas (Paris)WDR87
WikiGenes83889
SOURCE (Princeton)WDR87
Genetics Home Reference (NIH)WDR87
Genomic and cartography
GoldenPath hg38 (UCSC)WDR87  -     chr19:37884823-37906706 -  19q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR87  -     19q13.13   [Description]    (hg19-Feb_2009)
EnsemblWDR87 - 19q13.13 [CytoView hg19]  WDR87 - 19q13.13 [CytoView hg38]
Mapping of homologs : NCBIWDR87 [Mapview hg19]  WDR87 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128826 AK301941 AK302913 AY026504 HY010892
RefSeq transcript (Entrez)NM_001291088 NM_031951
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR87
Cluster EST : UnigeneHs.664194 [ NCBI ]
CGAP (NCI)Hs.664194
Alternative Splicing GalleryENSG00000171804
Gene ExpressionWDR87 [ NCBI-GEO ]   WDR87 [ EBI - ARRAY_EXPRESS ]   WDR87 [ SEEK ]   WDR87 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR87 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83889
GTEX Portal (Tissue expression)WDR87
Human Protein AtlasENSG00000171804-WDR87 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZQQ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZQQ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZQQ6
Splice isoforms : SwissVarQ6ZQQ6
PhosPhoSitePlusQ6ZQQ6
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)Quinoprotein_ADH-like_supfam    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR87
DMDM Disease mutations83889
Blocks (Seattle)WDR87
SuperfamilyQ6ZQQ6
Human Protein Atlas [tissue]ENSG00000171804-WDR87 [tissue]
Peptide AtlasQ6ZQQ6
IPIIPI00744524   IPI00397715   IPI00978471   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZQQ6
IntAct (EBI)Q6ZQQ6
FunCoupENSG00000171804
BioGRIDWDR87
STRING (EMBL)WDR87
ZODIACWDR87
Ontologies - Pathways
QuickGOQ6ZQQ6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkWDR87
Atlas of Cancer Signalling NetworkWDR87
Wikipedia pathwaysWDR87
Orthology - Evolution
OrthoDB83889
GeneTree (enSembl)ENSG00000171804
Phylogenetic Trees/Animal Genes : TreeFamWDR87
HOVERGENQ6ZQQ6
HOGENOMQ6ZQQ6
Homologs : HomoloGeneWDR87
Homology/Alignments : Family Browser (UCSC)WDR87
Gene fusions - Rearrangements
Fusion : QuiverWDR87
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR87 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR87
dbVarWDR87
ClinVarWDR87
1000_GenomesWDR87 
Exome Variant ServerWDR87
ExAC (Exome Aggregation Consortium)ENSG00000171804
GNOMAD BrowserENSG00000171804
Varsome BrowserWDR87
Genetic variants : HAPMAP83889
Genomic Variants (DGV)WDR87 [DGVbeta]
DECIPHERWDR87 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR87 
Mutations
ICGC Data PortalWDR87 
TCGA Data PortalWDR87 
Broad Tumor PortalWDR87
OASIS PortalWDR87 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR87  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR87
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR87
DgiDB (Drug Gene Interaction Database)WDR87
DoCM (Curated mutations)WDR87 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR87 (select a term)
intoGenWDR87
Cancer3DWDR87(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETWDR87
MedgenWDR87
Genetic Testing Registry WDR87
NextProtQ6ZQQ6 [Medical]
TSGene83889
GENETestsWDR87
Target ValidationWDR87
Huge Navigator WDR87 [HugePedia]
snp3D : Map Gene to Disease83889
BioCentury BCIQWDR87
ClinGenWDR87
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83889
Chemical/Pharm GKB GenePA145147633
Clinical trialWDR87
Miscellaneous
canSAR (ICR)WDR87 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR87
EVEXWDR87
GoPubMedWDR87
iHOPWDR87
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:38:26 CEST 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.