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WDR88 (WD repeat domain 88)

Identity

Alias_namesPQWD
PQQ repeat and WD repeat domain containing
Other alias
HGNC (Hugo) WDR88
LocusID (NCBI) 126248
Atlas_Id 75738
Location 19q13.11  [Link to chromosome band 19q13]
Location_base_pair Starts at 33132092 and ends at 33175797 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
WDR88 (19q13.11) / ZNF592 (15q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR88   26999
Cards
Entrez_Gene (NCBI)WDR88  126248  WD repeat domain 88
AliasesPQWD
GeneCards (Weizmann)WDR88
Ensembl hg19 (Hinxton)ENSG00000166359 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166359 [Gene_View]  chr19:33132092-33175797 [Contig_View]  WDR88 [Vega]
ICGC DataPortalENSG00000166359
TCGA cBioPortalWDR88
AceView (NCBI)WDR88
Genatlas (Paris)WDR88
WikiGenes126248
SOURCE (Princeton)WDR88
Genetics Home Reference (NIH)WDR88
Genomic and cartography
GoldenPath hg38 (UCSC)WDR88  -     chr19:33132092-33175797 +  19q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR88  -     19q13.11   [Description]    (hg19-Feb_2009)
EnsemblWDR88 - 19q13.11 [CytoView hg19]  WDR88 - 19q13.11 [CytoView hg38]
Mapping of homologs : NCBIWDR88 [Mapview hg19]  WDR88 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI982942 AK131444 BC031227 BC148666
RefSeq transcript (Entrez)NM_173479
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR88
Cluster EST : UnigeneHs.211046 [ NCBI ]
CGAP (NCI)Hs.211046
Alternative Splicing GalleryENSG00000166359
Gene ExpressionWDR88 [ NCBI-GEO ]   WDR88 [ EBI - ARRAY_EXPRESS ]   WDR88 [ SEEK ]   WDR88 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR88 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126248
GTEX Portal (Tissue expression)WDR88
Human Protein AtlasENSG00000166359-WDR88 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZMY6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZMY6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZMY6
Splice isoforms : SwissVarQ6ZMY6
PhosPhoSitePlusQ6ZMY6
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    PQQ_beta_propeller_repeat    PQQ_repeat    Quinoprotein_ADH-like_supfam    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)PQQ (PF01011)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam01011    pfam00400   
Domain families : Smart (EMBL)PQQ (SM00564)  WD40 (SM00320)  
Conserved Domain (NCBI)WDR88
DMDM Disease mutations126248
Blocks (Seattle)WDR88
SuperfamilyQ6ZMY6
Human Protein Atlas [tissue]ENSG00000166359-WDR88 [tissue]
Peptide AtlasQ6ZMY6
HPRD14033
IPIIPI00168665   IPI00479508   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZMY6
IntAct (EBI)Q6ZMY6
FunCoupENSG00000166359
BioGRIDWDR88
STRING (EMBL)WDR88
ZODIACWDR88
Ontologies - Pathways
QuickGOQ6ZMY6
Ontology : AmiGO
Ontology : EGO-EBI
WDR88
Atlas of Cancer Signalling NetworkWDR88
Wikipedia pathwaysWDR88
Orthology - Evolution
OrthoDB126248
GeneTree (enSembl)ENSG00000166359
Phylogenetic Trees/Animal Genes : TreeFamWDR88
HOVERGENQ6ZMY6
HOGENOMQ6ZMY6
Homologs : HomoloGeneWDR88
Homology/Alignments : Family Browser (UCSC)WDR88
Gene fusions - Rearrangements
Fusion: Tumor Portal WDR88
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR88 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR88
dbVarWDR88
ClinVarWDR88
1000_GenomesWDR88 
Exome Variant ServerWDR88
ExAC (Exome Aggregation Consortium)ENSG00000166359
GNOMAD BrowserENSG00000166359
Genetic variants : HAPMAP126248
Genomic Variants (DGV)WDR88 [DGVbeta]
DECIPHERWDR88 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR88 
Mutations
ICGC Data PortalWDR88 
TCGA Data PortalWDR88 
Broad Tumor PortalWDR88
OASIS PortalWDR88 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR88  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR88
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR88
DgiDB (Drug Gene Interaction Database)WDR88
DoCM (Curated mutations)WDR88 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR88 (select a term)
intoGenWDR88
Cancer3DWDR88(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWDR88
Genetic Testing Registry WDR88
NextProtQ6ZMY6 [Medical]
TSGene126248
GENETestsWDR88
Target ValidationWDR88
Huge Navigator WDR88 [HugePedia]
snp3D : Map Gene to Disease126248
BioCentury BCIQWDR88
ClinGenWDR88
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126248
Chemical/Pharm GKB GenePA162409139
Clinical trialWDR88
Miscellaneous
canSAR (ICR)WDR88 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR88
EVEXWDR88
GoPubMedWDR88
iHOPWDR88
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:35:48 CET 2017

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