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WDR89 (WD repeat domain 89)

Identity

Alias_namesC14orf150
Alias_symbol (synonym)MGC9907
Other aliasMSTP050
HGNC (Hugo) WDR89
LocusID (NCBI) 112840
Atlas_Id 75739
Location 14q23.2  [Link to chromosome band 14q23]
Location_base_pair Starts at 64063757 and ends at 64108641 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR89   20489
Cards
Entrez_Gene (NCBI)WDR89  112840  WD repeat domain 89
AliasesC14orf150; MSTP050
GeneCards (Weizmann)WDR89
Ensembl hg19 (Hinxton) [Gene_View]  chr14:64063757-64108641 [Contig_View]  WDR89 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:64063757-64108641 [Contig_View]  WDR89 [Vega]
TCGA cBioPortalWDR89
AceView (NCBI)WDR89
Genatlas (Paris)WDR89
WikiGenes112840
SOURCE (Princeton)WDR89
Genetics Home Reference (NIH)WDR89
Genomic and cartography
GoldenPath hg19 (UCSC)WDR89  -     chr14:64063757-64108641 -  14q23.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WDR89  -     14q23.2   [Description]    (hg38-Dec_2013)
EnsemblWDR89 - 14q23.2 [CytoView hg19]  WDR89 - 14q23.2 [CytoView hg38]
Mapping of homologs : NCBIWDR89 [Mapview hg19]  WDR89 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF115513 AK095324 BC010698 BI603622 BP278550
RefSeq transcript (Entrez)NM_001008726 NM_001258272 NM_080666
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)WDR89
Cluster EST : UnigeneHs.741323 [ NCBI ]
CGAP (NCI)Hs.741323
Gene ExpressionWDR89 [ NCBI-GEO ]   WDR89 [ EBI - ARRAY_EXPRESS ]   WDR89 [ SEEK ]   WDR89 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR89 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112840
GTEX Portal (Tissue expression)WDR89
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FK6
Splice isoforms : SwissVarQ96FK6
PhosPhoSitePlusQ96FK6
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR89
DMDM Disease mutations112840
Blocks (Seattle)WDR89
SuperfamilyQ96FK6
Peptide AtlasQ96FK6
HPRD12635
IPIIPI00062040   IPI01026423   
Protein Interaction databases
DIP (DOE-UCLA)Q96FK6
IntAct (EBI)Q96FK6
BioGRIDWDR89
STRING (EMBL)WDR89
ZODIACWDR89
Ontologies - Pathways
QuickGOQ96FK6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkWDR89
Atlas of Cancer Signalling NetworkWDR89
Wikipedia pathwaysWDR89
Orthology - Evolution
OrthoDB112840
Phylogenetic Trees/Animal Genes : TreeFamWDR89
HOVERGENQ96FK6
HOGENOMQ96FK6
Homologs : HomoloGeneWDR89
Homology/Alignments : Family Browser (UCSC)WDR89
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR89 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR89
dbVarWDR89
ClinVarWDR89
1000_GenomesWDR89 
Exome Variant ServerWDR89
ExAC (Exome Aggregation Consortium)WDR89 (select the gene name)
Genetic variants : HAPMAP112840
Genomic Variants (DGV)WDR89 [DGVbeta]
DECIPHER (Syndromes)14:64063757-64108641  
CONAN: Copy Number AnalysisWDR89 
Mutations
ICGC Data PortalWDR89 
TCGA Data PortalWDR89 
Broad Tumor PortalWDR89
OASIS PortalWDR89 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR89  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR89
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR89
DgiDB (Drug Gene Interaction Database)WDR89
DoCM (Curated mutations)WDR89 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR89 (select a term)
intoGenWDR89
Cancer3DWDR89(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWDR89
Genetic Testing Registry WDR89
NextProtQ96FK6 [Medical]
TSGene112840
GENETestsWDR89
Huge Navigator WDR89 [HugePedia]
snp3D : Map Gene to Disease112840
BioCentury BCIQWDR89
ClinGenWDR89
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD112840
Chemical/Pharm GKB GenePA134871067
Clinical trialWDR89
Miscellaneous
canSAR (ICR)WDR89 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR89
EVEXWDR89
GoPubMedWDR89
iHOPWDR89
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:41 CET 2017

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