Atlas of Genetics and Cytogenetics in Oncology and Haematology


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WDR90 (WD repeat domain 90)

Identity

Alias (NCBI)C16orf15
C16orf16
C16orf17
C16orf18
C16orf19
POC16
HGNC (Hugo) WDR90
HGNC Alias symbFLJ36483
KIAA1924
HGNC Previous nameC16orf17
 C16orf15
 C16orf16
 C16orf19
 C16orf18
HGNC Previous namechromosome 16 open reading frame 17
 chromosome 16 open reading frame 15
 chromosome 16 open reading frame 16
 chromosome 16 open reading frame 19
 chromosome 16 open reading frame 18
LocusID (NCBI) 197335
Atlas_Id 75740
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 649365 and ends at 667830 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CEP295 (11q21) / WDR90 (16p13.3)NUDT5 (10p13) / WDR90 (16p13.3)SLC2A6 (9q34.2) / WDR90 (16p13.3)
WDR90 (16p13.3) / RAB40C (16p13.3)WDR90 (16p13.3) / RHOT2 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)WDR90   26960
Cards
Entrez_Gene (NCBI)WDR90    WD repeat domain 90
AliasesC16orf15; C16orf16; C16orf17; C16orf18; 
C16orf19; POC16
GeneCards (Weizmann)WDR90
Ensembl hg19 (Hinxton)ENSG00000161996 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161996 [Gene_View]  ENSG00000161996 [Sequence]  chr16:649365-667830 [Contig_View]  WDR90 [Vega]
ICGC DataPortalENSG00000161996
TCGA cBioPortalWDR90
AceView (NCBI)WDR90
Genatlas (Paris)WDR90
SOURCE (Princeton)WDR90
Genetics Home Reference (NIH)WDR90
Genomic and cartography
GoldenPath hg38 (UCSC)WDR90  -     chr16:649365-667830 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR90  -     16p13.3   [Description]    (hg19-Feb_2009)
GoldenPathWDR90 - 16p13.3 [CytoView hg19]  WDR90 - 16p13.3 [CytoView hg38]
ImmunoBaseENSG00000161996
Genome Data Viewer NCBIWDR90 [Mapview hg19]  
OMIM618290   
Gene and transcription
Genbank (Entrez)AB067511 AK091062 AK092719 AK093609 AK093802
RefSeq transcript (Entrez)NM_145294 NM_153239
Consensus coding sequences : CCDS (NCBI)WDR90
Gene ExpressionWDR90 [ NCBI-GEO ]   WDR90 [ EBI - ARRAY_EXPRESS ]   WDR90 [ SEEK ]   WDR90 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR90 [ Firebrowse - Broad ]
GenevisibleExpression of WDR90 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)197335
GTEX Portal (Tissue expression)WDR90
Human Protein AtlasENSG00000161996-WDR90 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)WDR90
Human Protein Atlas [tissue]ENSG00000161996-WDR90 [tissue]
HPRD08311
Protein Interaction databases
BioGRIDWDR90
STRING (EMBL)WDR90
ZODIACWDR90
Ontologies - Pathways
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXWDR90
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:28:31 CEST 2021

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