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WDR90 (WD repeat domain 90)

Identity

Alias_namesC16orf17
C16orf15
C16orf16
C16orf19
C16orf18
chromosome 16 open reading frame 17
chromosome 16 open reading frame 15
chromosome 16 open reading frame 16
chromosome 16 open reading frame 19
chromosome 16 open reading frame 18
Alias_symbol (synonym)FLJ36483
KIAA1924
Other alias
HGNC (Hugo) WDR90
LocusID (NCBI) 197335
Atlas_Id 75740
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 699363 and ends at 717829 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CEP295 (11q21) / WDR90 (16p13.3)NUDT5 (10p13) / WDR90 (16p13.3)SLC2A6 (9q34.2) / WDR90 (16p13.3)
WDR90 (16p13.3) / RAB40C (16p13.3)WDR90 (16p13.3) / RHOT2 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR90   26960
Cards
Entrez_Gene (NCBI)WDR90  197335  WD repeat domain 90
AliasesC16orf15; C16orf16; C16orf17; C16orf18; 
C16orf19
GeneCards (Weizmann)WDR90
Ensembl hg19 (Hinxton)ENSG00000161996 [Gene_View]  chr16:699363-717829 [Contig_View]  WDR90 [Vega]
Ensembl hg38 (Hinxton)ENSG00000161996 [Gene_View]  chr16:699363-717829 [Contig_View]  WDR90 [Vega]
ICGC DataPortalENSG00000161996
TCGA cBioPortalWDR90
AceView (NCBI)WDR90
Genatlas (Paris)WDR90
WikiGenes197335
SOURCE (Princeton)WDR90
Genetics Home Reference (NIH)WDR90
Genomic and cartography
GoldenPath hg19 (UCSC)WDR90  -     chr16:699363-717829 +  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WDR90  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblWDR90 - 16p13.3 [CytoView hg19]  WDR90 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIWDR90 [Mapview hg19]  WDR90 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB067511 AK091062 AK092719 AK093609 AK093802
RefSeq transcript (Entrez)NM_145294 NM_153239
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)WDR90
Cluster EST : UnigeneHs.511903 [ NCBI ]
CGAP (NCI)Hs.511903
Alternative Splicing GalleryENSG00000161996
Gene ExpressionWDR90 [ NCBI-GEO ]   WDR90 [ EBI - ARRAY_EXPRESS ]   WDR90 [ SEEK ]   WDR90 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR90 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)197335
GTEX Portal (Tissue expression)WDR90
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KV7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KV7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KV7
Splice isoforms : SwissVarQ96KV7
PhosPhoSitePlusQ96KV7
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)CFA20/WDR90/C3orf67    Nucleoporin_Nup160    Quinonprotein_ADH-like_supfam    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom    WDR90   
Domain families : Pfam (Sanger)DUF667 (PF05018)    Nup160 (PF11715)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam05018    pfam11715    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR90
DMDM Disease mutations197335
Blocks (Seattle)WDR90
SuperfamilyQ96KV7
Human Protein AtlasENSG00000161996
Peptide AtlasQ96KV7
HPRD08311
IPIIPI01017969   IPI00895900   IPI00903109   IPI00439437   IPI01022614   IPI01022405   IPI01022039   IPI01021901   IPI01021775   IPI00847889   
Protein Interaction databases
DIP (DOE-UCLA)Q96KV7
IntAct (EBI)Q96KV7
FunCoupENSG00000161996
BioGRIDWDR90
STRING (EMBL)WDR90
ZODIACWDR90
Ontologies - Pathways
QuickGOQ96KV7
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkWDR90
Atlas of Cancer Signalling NetworkWDR90
Wikipedia pathwaysWDR90
Orthology - Evolution
OrthoDB197335
GeneTree (enSembl)ENSG00000161996
Phylogenetic Trees/Animal Genes : TreeFamWDR90
HOVERGENQ96KV7
HOGENOMQ96KV7
Homologs : HomoloGeneWDR90
Homology/Alignments : Family Browser (UCSC)WDR90
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR90 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR90
dbVarWDR90
ClinVarWDR90
1000_GenomesWDR90 
Exome Variant ServerWDR90
ExAC (Exome Aggregation Consortium)WDR90 (select the gene name)
Genetic variants : HAPMAP197335
Genomic Variants (DGV)WDR90 [DGVbeta]
DECIPHER (Syndromes)16:699363-717829  ENSG00000161996
CONAN: Copy Number AnalysisWDR90 
Mutations
ICGC Data PortalWDR90 
TCGA Data PortalWDR90 
Broad Tumor PortalWDR90
OASIS PortalWDR90 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR90  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR90
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR90
DgiDB (Drug Gene Interaction Database)WDR90
DoCM (Curated mutations)WDR90 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR90 (select a term)
intoGenWDR90
Cancer3DWDR90(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWDR90
Genetic Testing Registry WDR90
NextProtQ96KV7 [Medical]
TSGene197335
GENETestsWDR90
Huge Navigator WDR90 [HugePedia]
snp3D : Map Gene to Disease197335
BioCentury BCIQWDR90
ClinGenWDR90
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD197335
Chemical/Pharm GKB GenePA145147652
Clinical trialWDR90
Miscellaneous
canSAR (ICR)WDR90 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR90
EVEXWDR90
GoPubMedWDR90
iHOPWDR90
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:41 CET 2017

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