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WDR92 (WD repeat domain 92)

Identity

Alias_symbol (synonym)FLJ31741
Monad
Other alias-
HGNC (Hugo) WDR92
LocusID (NCBI) 116143
Atlas_Id 53711
Location 2p14  [Link to chromosome band 2p14]
Location_base_pair Starts at 68134091 and ends at 68157560 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
USP34 (2p15) / WDR92 (2p14)USP34 2p15 / WDR92 2p14

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR92   25176
Cards
Entrez_Gene (NCBI)WDR92  116143  WD repeat domain 92
Aliases
GeneCards (Weizmann)WDR92
Ensembl hg19 (Hinxton)ENSG00000243667 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243667 [Gene_View]  chr2:68134091-68157560 [Contig_View]  WDR92 [Vega]
ICGC DataPortalENSG00000243667
TCGA cBioPortalWDR92
AceView (NCBI)WDR92
Genatlas (Paris)WDR92
WikiGenes116143
SOURCE (Princeton)WDR92
Genetics Home Reference (NIH)WDR92
Genomic and cartography
GoldenPath hg38 (UCSC)WDR92  -     chr2:68134091-68157560 -  2p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR92  -     2p14   [Description]    (hg19-Feb_2009)
EnsemblWDR92 - 2p14 [CytoView hg19]  WDR92 - 2p14 [CytoView hg38]
Mapping of homologs : NCBIWDR92 [Mapview hg19]  WDR92 [Mapview hg38]
OMIM610729   
Gene and transcription
Genbank (Entrez)AK056303 AK058090 AK090527 AL834142 AY541587
RefSeq transcript (Entrez)NM_001256476 NM_138458
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR92
Cluster EST : UnigeneHs.631877 [ NCBI ]
CGAP (NCI)Hs.631877
Alternative Splicing GalleryENSG00000243667
Gene ExpressionWDR92 [ NCBI-GEO ]   WDR92 [ EBI - ARRAY_EXPRESS ]   WDR92 [ SEEK ]   WDR92 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR92 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116143
GTEX Portal (Tissue expression)WDR92
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MX6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MX6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MX6
Splice isoforms : SwissVarQ96MX6
PhosPhoSitePlusQ96MX6
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR92
DMDM Disease mutations116143
Blocks (Seattle)WDR92
PDB (SRS)3I2N   
PDB (PDBSum)3I2N   
PDB (IMB)3I2N   
PDB (RSDB)3I2N   
Structural Biology KnowledgeBase3I2N   
SCOP (Structural Classification of Proteins)3I2N   
CATH (Classification of proteins structures)3I2N   
SuperfamilyQ96MX6
Human Protein AtlasENSG00000243667
Peptide AtlasQ96MX6
HPRD14012
IPIIPI00065088   IPI00465211   IPI01010677   IPI00916920   
Protein Interaction databases
DIP (DOE-UCLA)Q96MX6
IntAct (EBI)Q96MX6
FunCoupENSG00000243667
BioGRIDWDR92
STRING (EMBL)WDR92
ZODIACWDR92
Ontologies - Pathways
QuickGOQ96MX6
Ontology : AmiGOprotein binding  apoptotic process  
Ontology : EGO-EBIprotein binding  apoptotic process  
NDEx NetworkWDR92
Atlas of Cancer Signalling NetworkWDR92
Wikipedia pathwaysWDR92
Orthology - Evolution
OrthoDB116143
GeneTree (enSembl)ENSG00000243667
Phylogenetic Trees/Animal Genes : TreeFamWDR92
HOVERGENQ96MX6
HOGENOMQ96MX6
Homologs : HomoloGeneWDR92
Homology/Alignments : Family Browser (UCSC)WDR92
Gene fusions - Rearrangements
Fusion: TCGAUSP34 2p15 WDR92 2p14 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR92 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR92
dbVarWDR92
ClinVarWDR92
1000_GenomesWDR92 
Exome Variant ServerWDR92
ExAC (Exome Aggregation Consortium)WDR92 (select the gene name)
Genetic variants : HAPMAP116143
Genomic Variants (DGV)WDR92 [DGVbeta]
DECIPHERWDR92 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR92 
Mutations
ICGC Data PortalWDR92 
TCGA Data PortalWDR92 
Broad Tumor PortalWDR92
OASIS PortalWDR92 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR92  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR92
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR92
DgiDB (Drug Gene Interaction Database)WDR92
DoCM (Curated mutations)WDR92 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR92 (select a term)
intoGenWDR92
Cancer3DWDR92(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610729   
Orphanet
MedgenWDR92
Genetic Testing Registry WDR92
NextProtQ96MX6 [Medical]
TSGene116143
GENETestsWDR92
Target ValidationWDR92
Huge Navigator WDR92 [HugePedia]
snp3D : Map Gene to Disease116143
BioCentury BCIQWDR92
ClinGenWDR92
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116143
Chemical/Pharm GKB GenePA162409167
Clinical trialWDR92
Miscellaneous
canSAR (ICR)WDR92 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR92
EVEXWDR92
GoPubMedWDR92
iHOPWDR92
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:02:50 CEST 2017

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