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WDR93 (WD repeat domain 93)

Identity

Other alias-
HGNC (Hugo) WDR93
LocusID (NCBI) 56964
Atlas_Id 75742
Location 15q26.1  [Link to chromosome band 15q26]
Location_base_pair Starts at 90234028 and ends at 90286869 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SEMA4B (15q26.1) / WDR93 (15q26.1)SNX18 (5q11.2) / WDR93 (15q26.1)SNX18 WDR93
SEMA4B WDR93

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR93   26924
Cards
Entrez_Gene (NCBI)WDR93  56964  WD repeat domain 93
Aliases
GeneCards (Weizmann)WDR93
Ensembl hg19 (Hinxton)ENSG00000140527 [Gene_View]  chr15:90234028-90286869 [Contig_View]  WDR93 [Vega]
Ensembl hg38 (Hinxton)ENSG00000140527 [Gene_View]  chr15:90234028-90286869 [Contig_View]  WDR93 [Vega]
ICGC DataPortalENSG00000140527
TCGA cBioPortalWDR93
AceView (NCBI)WDR93
Genatlas (Paris)WDR93
WikiGenes56964
SOURCE (Princeton)WDR93
Genetics Home Reference (NIH)WDR93
Genomic and cartography
GoldenPath hg19 (UCSC)WDR93  -     chr15:90234028-90286869 +  15q26.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WDR93  -     15q26.1   [Description]    (hg38-Dec_2013)
EnsemblWDR93 - 15q26.1 [CytoView hg19]  WDR93 - 15q26.1 [CytoView hg38]
Mapping of homologs : NCBIWDR93 [Mapview hg19]  WDR93 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097525 AK302032 AK304683 AL390084 AL390085
RefSeq transcript (Entrez)NM_001284395 NM_001284396 NM_020212
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929399
Consensus coding sequences : CCDS (NCBI)WDR93
Cluster EST : UnigeneHs.177557 [ NCBI ]
CGAP (NCI)Hs.177557
Alternative Splicing GalleryENSG00000140527
Gene ExpressionWDR93 [ NCBI-GEO ]   WDR93 [ EBI - ARRAY_EXPRESS ]   WDR93 [ SEEK ]   WDR93 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR93 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56964
GTEX Portal (Tissue expression)WDR93
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P2C0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P2C0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P2C0
Splice isoforms : SwissVarQ6P2C0
PhosPhoSitePlusQ6P2C0
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)   
Domains : Interpro (EBI)NADH_UbQ_FeS_4_mit    WD40/YVTN_repeat-like_dom    WD40_repeat_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)WDR93
DMDM Disease mutations56964
Blocks (Seattle)WDR93
SuperfamilyQ6P2C0
Human Protein AtlasENSG00000140527
Peptide AtlasQ6P2C0
HPRD14253
IPIIPI00783408   IPI00885116   IPI01015168   
Protein Interaction databases
DIP (DOE-UCLA)Q6P2C0
IntAct (EBI)Q6P2C0
FunCoupENSG00000140527
BioGRIDWDR93
STRING (EMBL)WDR93
ZODIACWDR93
Ontologies - Pathways
QuickGOQ6P2C0
Ontology : AmiGOoxidoreductase activity, acting on NAD(P)H  electron transport chain  
Ontology : EGO-EBIoxidoreductase activity, acting on NAD(P)H  electron transport chain  
NDEx NetworkWDR93
Atlas of Cancer Signalling NetworkWDR93
Wikipedia pathwaysWDR93
Orthology - Evolution
OrthoDB56964
GeneTree (enSembl)ENSG00000140527
Phylogenetic Trees/Animal Genes : TreeFamWDR93
HOVERGENQ6P2C0
HOGENOMQ6P2C0
Homologs : HomoloGeneWDR93
Homology/Alignments : Family Browser (UCSC)WDR93
Gene fusions - Rearrangements
Fusion: TCGASNX18 WDR93
Fusion: TCGASEMA4B WDR93
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR93 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR93
dbVarWDR93
ClinVarWDR93
1000_GenomesWDR93 
Exome Variant ServerWDR93
ExAC (Exome Aggregation Consortium)WDR93 (select the gene name)
Genetic variants : HAPMAP56964
Genomic Variants (DGV)WDR93 [DGVbeta]
DECIPHER (Syndromes)15:90234028-90286869  ENSG00000140527
CONAN: Copy Number AnalysisWDR93 
Mutations
ICGC Data PortalWDR93 
TCGA Data PortalWDR93 
Broad Tumor PortalWDR93
OASIS PortalWDR93 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR93  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDR93
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR93
DgiDB (Drug Gene Interaction Database)WDR93
DoCM (Curated mutations)WDR93 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR93 (select a term)
intoGenWDR93
Cancer3DWDR93(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWDR93
Genetic Testing Registry WDR93
NextProtQ6P2C0 [Medical]
TSGene56964
GENETestsWDR93
Huge Navigator WDR93 [HugePedia]
snp3D : Map Gene to Disease56964
BioCentury BCIQWDR93
ClinGenWDR93
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56964
Chemical/Pharm GKB GenePA162409188
Clinical trialWDR93
Miscellaneous
canSAR (ICR)WDR93 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR93
EVEXWDR93
GoPubMedWDR93
iHOPWDR93
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:41 CET 2017

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