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WDR97 (WD repeat domain 97)

Identity

Alias_namesKIAA1875
KIAA1875
Other alias
HGNC (Hugo) WDR97
LocusID (NCBI) 340390
Atlas_Id 78032
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 144107692 and ends at 144116383 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PCMTD1 (8q11.23) / WDR97 (8q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDR97   26959
Cards
Entrez_Gene (NCBI)WDR97  340390  WD repeat domain 97
AliasesKIAA1875
GeneCards (Weizmann)WDR97
Ensembl hg19 (Hinxton)ENSG00000179698 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179698 [Gene_View]  chr8:144107692-144116383 [Contig_View]  WDR97 [Vega]
ICGC DataPortalENSG00000179698
TCGA cBioPortalWDR97
AceView (NCBI)WDR97
Genatlas (Paris)WDR97
WikiGenes340390
SOURCE (Princeton)WDR97
Genetics Home Reference (NIH)WDR97
Genomic and cartography
GoldenPath hg38 (UCSC)WDR97  -     chr8:144107692-144116383 +  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR97  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblWDR97 - 8q24.3 [CytoView hg19]  WDR97 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIWDR97 [Mapview hg19]  WDR97 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB058778 AI567202 AK095597 AK124611 AK302485
RefSeq transcript (Entrez)NM_001316309 NM_032529
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR97
Cluster EST : UnigeneHs.98723 [ NCBI ]
CGAP (NCI)Hs.98723
Alternative Splicing GalleryENSG00000179698
Gene ExpressionWDR97 [ NCBI-GEO ]   WDR97 [ EBI - ARRAY_EXPRESS ]   WDR97 [ SEEK ]   WDR97 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR97 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340390
GTEX Portal (Tissue expression)WDR97
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NE52   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NE52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NE52
Splice isoforms : SwissVarA6NE52
PhosPhoSitePlusA6NE52
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)WDR97
DMDM Disease mutations340390
Blocks (Seattle)WDR97
SuperfamilyA6NE52
Human Protein AtlasENSG00000179698
Peptide AtlasA6NE52
HPRD11168
IPIIPI00640715   IPI00377122   IPI00909490   IPI00446202   
Protein Interaction databases
DIP (DOE-UCLA)A6NE52
IntAct (EBI)A6NE52
FunCoupENSG00000179698
BioGRIDWDR97
STRING (EMBL)WDR97
ZODIACWDR97
Ontologies - Pathways
QuickGOA6NE52
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkWDR97
Atlas of Cancer Signalling NetworkWDR97
Wikipedia pathwaysWDR97
Orthology - Evolution
OrthoDB340390
GeneTree (enSembl)ENSG00000179698
Phylogenetic Trees/Animal Genes : TreeFamWDR97
HOVERGENA6NE52
HOGENOMA6NE52
Homologs : HomoloGeneWDR97
Homology/Alignments : Family Browser (UCSC)WDR97
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR97 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDR97
dbVarWDR97
ClinVarWDR97
1000_GenomesWDR97 
Exome Variant ServerWDR97
ExAC (Exome Aggregation Consortium)WDR97 (select the gene name)
Genetic variants : HAPMAP340390
Genomic Variants (DGV)WDR97 [DGVbeta]
DECIPHERWDR97 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR97 
Mutations
ICGC Data PortalWDR97 
TCGA Data PortalWDR97 
Broad Tumor PortalWDR97
OASIS PortalWDR97 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDWDR97
BioMutasearch WDR97
DgiDB (Drug Gene Interaction Database)WDR97
DoCM (Curated mutations)WDR97 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR97 (select a term)
intoGenWDR97
Cancer3DWDR97(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWDR97
Genetic Testing Registry WDR97
NextProtA6NE52 [Medical]
TSGene340390
GENETestsWDR97
Target ValidationWDR97
Huge Navigator WDR97 [HugePedia]
snp3D : Map Gene to Disease340390
BioCentury BCIQWDR97
ClinGenWDR97
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340390
Chemical/Pharm GKB GenePA142671601
Clinical trialWDR97
Miscellaneous
canSAR (ICR)WDR97 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR97
EVEXWDR97
GoPubMedWDR97
iHOPWDR97
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:02 CEST 2017

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