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WDSUB1 (WD repeat, sterile alpha motif and U-box domain containing 1)

Identity

Alias_namesWDSAM1
WD repeat and SAM domain containing 1
WD repeat, SAM and U-box domain containing 1
Alias_symbol (synonym)UBOX6
FLJ36175
Other alias
HGNC (Hugo) WDSUB1
LocusID (NCBI) 151525
Atlas_Id 75743
Location 2q24.2  [Link to chromosome band 2q24]
Location_base_pair Starts at 159235793 and ends at 159286799 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC148 (2q24.1) / WDSUB1 (2q24.2)WDSUB1 (2q24.2) / BAZ2B (2q24.2)WDSUB1 (2q24.2) / GPD2 (2q24.1)
WDSUB1 (2q24.2) / ILF2 (1q21.3)WDSUB1 (2q24.2) / NUF2 (1q23.3)WDSUB1 GPD2
WDSUB1 BAZ2B

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WDSUB1   26697
Cards
Entrez_Gene (NCBI)WDSUB1  151525  WD repeat, sterile alpha motif and U-box domain containing 1
AliasesUBOX6; WDSAM1
GeneCards (Weizmann)WDSUB1
Ensembl hg19 (Hinxton)ENSG00000196151 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196151 [Gene_View]  chr2:159235793-159286799 [Contig_View]  WDSUB1 [Vega]
ICGC DataPortalENSG00000196151
TCGA cBioPortalWDSUB1
AceView (NCBI)WDSUB1
Genatlas (Paris)WDSUB1
WikiGenes151525
SOURCE (Princeton)WDSUB1
Genetics Home Reference (NIH)WDSUB1
Genomic and cartography
GoldenPath hg38 (UCSC)WDSUB1  -     chr2:159235793-159286799 -  2q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDSUB1  -     2q24.2   [Description]    (hg19-Feb_2009)
EnsemblWDSUB1 - 2q24.2 [CytoView hg19]  WDSUB1 - 2q24.2 [CytoView hg38]
Mapping of homologs : NCBIWDSUB1 [Mapview hg19]  WDSUB1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093494 AK129983 AL040518 BC029520 BG186973
RefSeq transcript (Entrez)NM_001128212 NM_001128213 NM_001307994 NM_001330274 NM_001330276 NM_001330277 NM_001330278 NM_001330279 NM_001330280 NM_152528
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDSUB1
Cluster EST : UnigeneHs.20848 [ NCBI ]
CGAP (NCI)Hs.20848
Alternative Splicing GalleryENSG00000196151
Gene ExpressionWDSUB1 [ NCBI-GEO ]   WDSUB1 [ EBI - ARRAY_EXPRESS ]   WDSUB1 [ SEEK ]   WDSUB1 [ MEM ]
Gene Expression Viewer (FireBrowse)WDSUB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151525
GTEX Portal (Tissue expression)WDSUB1
Human Protein AtlasENSG00000196151-WDSUB1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9V3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9V3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9V3
Splice isoforms : SwissVarQ8N9V3
PhosPhoSitePlusQ8N9V3
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)    U_BOX (PS51698)    WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    Quinoprotein_ADH-like_supfam    SAM    SAM/pointed    Ubox_domain    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)SAM_2 (PF07647)    U-box (PF04564)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam07647    pfam04564    pfam00400   
Domain families : Smart (EMBL)SAM (SM00454)  Ubox (SM00504)  WD40 (SM00320)  
Conserved Domain (NCBI)WDSUB1
DMDM Disease mutations151525
Blocks (Seattle)WDSUB1
SuperfamilyQ8N9V3
Human Protein Atlas [tissue]ENSG00000196151-WDSUB1 [tissue]
Peptide AtlasQ8N9V3
HPRD08773
IPIIPI00167822   IPI00477952   IPI00915918   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9V3
IntAct (EBI)Q8N9V3
FunCoupENSG00000196151
BioGRIDWDSUB1
STRING (EMBL)WDSUB1
ZODIACWDSUB1
Ontologies - Pathways
QuickGOQ8N9V3
Ontology : AmiGOubiquitin-protein transferase activity  protein ubiquitination  
Ontology : EGO-EBIubiquitin-protein transferase activity  protein ubiquitination  
NDEx NetworkWDSUB1
Atlas of Cancer Signalling NetworkWDSUB1
Wikipedia pathwaysWDSUB1
Orthology - Evolution
OrthoDB151525
GeneTree (enSembl)ENSG00000196151
Phylogenetic Trees/Animal Genes : TreeFamWDSUB1
HOVERGENQ8N9V3
HOGENOMQ8N9V3
Homologs : HomoloGeneWDSUB1
Homology/Alignments : Family Browser (UCSC)WDSUB1
Gene fusions - Rearrangements
Fusion: TCGA_MDACCWDSUB1 GPD2
Fusion: TCGA_MDACCWDSUB1 BAZ2B
Tumor Fusion PortalWDSUB1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDSUB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WDSUB1
dbVarWDSUB1
ClinVarWDSUB1
1000_GenomesWDSUB1 
Exome Variant ServerWDSUB1
ExAC (Exome Aggregation Consortium)ENSG00000196151
GNOMAD BrowserENSG00000196151
Genetic variants : HAPMAP151525
Genomic Variants (DGV)WDSUB1 [DGVbeta]
DECIPHERWDSUB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDSUB1 
Mutations
ICGC Data PortalWDSUB1 
TCGA Data PortalWDSUB1 
Broad Tumor PortalWDSUB1
OASIS PortalWDSUB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDSUB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWDSUB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDSUB1
DgiDB (Drug Gene Interaction Database)WDSUB1
DoCM (Curated mutations)WDSUB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDSUB1 (select a term)
intoGenWDSUB1
Cancer3DWDSUB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETWDSUB1
MedgenWDSUB1
Genetic Testing Registry WDSUB1
NextProtQ8N9V3 [Medical]
TSGene151525
GENETestsWDSUB1
Target ValidationWDSUB1
Huge Navigator WDSUB1 [HugePedia]
snp3D : Map Gene to Disease151525
BioCentury BCIQWDSUB1
ClinGenWDSUB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151525
Chemical/Pharm GKB GenePA128394761
Clinical trialWDSUB1
Miscellaneous
canSAR (ICR)WDSUB1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDSUB1
EVEXWDSUB1
GoPubMedWDSUB1
iHOPWDSUB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:21:45 CET 2017

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