Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

WFDC10A (WAP four-disulfide core domain 10A)

Identity

Alias_namesC20orf146
chromosome 20 open reading frame 146
Alias_symbol (synonym)dJ688G8.3
WAP10
Other alias
HGNC (Hugo) WFDC10A
LocusID (NCBI) 140832
Atlas_Id 75747
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45629746 and ends at 45631192 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WFDC10A   16139
Cards
Entrez_Gene (NCBI)WFDC10A  140832  WAP four-disulfide core domain 10A
AliasesC20orf146; WAP10; dJ688G8.3
GeneCards (Weizmann)WFDC10A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:45629746-45631192 [Contig_View]  WFDC10A [Vega]
TCGA cBioPortalWFDC10A
AceView (NCBI)WFDC10A
Genatlas (Paris)WFDC10A
WikiGenes140832
SOURCE (Princeton)WFDC10A
Genetics Home Reference (NIH)WFDC10A
Genomic and cartography
GoldenPath hg38 (UCSC)WFDC10A  -     chr20:45629746-45631192 +  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WFDC10A  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblWFDC10A - 20q13.12 [CytoView hg19]  WFDC10A - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIWFDC10A [Mapview hg19]  WFDC10A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY038182 BC131579
RefSeq transcript (Entrez)NM_080753
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WFDC10A
Cluster EST : UnigeneHs.199380 [ NCBI ]
CGAP (NCI)Hs.199380
Gene ExpressionWFDC10A [ NCBI-GEO ]   WFDC10A [ EBI - ARRAY_EXPRESS ]   WFDC10A [ SEEK ]   WFDC10A [ MEM ]
Gene Expression Viewer (FireBrowse)WFDC10A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140832
GTEX Portal (Tissue expression)WFDC10A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1F0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1F0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1F0
Splice isoforms : SwissVarQ9H1F0
PhosPhoSitePlusQ9H1F0
Domaine pattern : Prosite (Expaxy)WAP (PS51390)   
Domains : Interpro (EBI)WAP_dom   
Domain families : Pfam (Sanger)WAP (PF00095)   
Domain families : Pfam (NCBI)pfam00095   
Conserved Domain (NCBI)WFDC10A
DMDM Disease mutations140832
Blocks (Seattle)WFDC10A
SuperfamilyQ9H1F0
Peptide AtlasQ9H1F0
HPRD15671
IPIIPI00167942   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1F0
IntAct (EBI)Q9H1F0
BioGRIDWFDC10A
STRING (EMBL)WFDC10A
ZODIACWFDC10A
Ontologies - Pathways
QuickGOQ9H1F0
Ontology : AmiGOserine-type endopeptidase inhibitor activity  extracellular region  negative regulation of endopeptidase activity  
Ontology : EGO-EBIserine-type endopeptidase inhibitor activity  extracellular region  negative regulation of endopeptidase activity  
NDEx NetworkWFDC10A
Atlas of Cancer Signalling NetworkWFDC10A
Wikipedia pathwaysWFDC10A
Orthology - Evolution
OrthoDB140832
Phylogenetic Trees/Animal Genes : TreeFamWFDC10A
HOVERGENQ9H1F0
HOGENOMQ9H1F0
Homologs : HomoloGeneWFDC10A
Homology/Alignments : Family Browser (UCSC)WFDC10A
Gene fusions - Rearrangements
Tumor Fusion PortalWFDC10A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWFDC10A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WFDC10A
dbVarWFDC10A
ClinVarWFDC10A
1000_GenomesWFDC10A 
Exome Variant ServerWFDC10A
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP140832
Genomic Variants (DGV)WFDC10A [DGVbeta]
DECIPHERWFDC10A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWFDC10A 
Mutations
ICGC Data PortalWFDC10A 
TCGA Data PortalWFDC10A 
Broad Tumor PortalWFDC10A
OASIS PortalWFDC10A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWFDC10A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWFDC10A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WFDC10A
DgiDB (Drug Gene Interaction Database)WFDC10A
DoCM (Curated mutations)WFDC10A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WFDC10A (select a term)
intoGenWFDC10A
Cancer3DWFDC10A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETWFDC10A
MedgenWFDC10A
Genetic Testing Registry WFDC10A
NextProtQ9H1F0 [Medical]
TSGene140832
GENETestsWFDC10A
Target ValidationWFDC10A
Huge Navigator WFDC10A [HugePedia]
snp3D : Map Gene to Disease140832
BioCentury BCIQWFDC10A
ClinGenWFDC10A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140832
Chemical/Pharm GKB GenePA25688
Clinical trialWFDC10A
Miscellaneous
canSAR (ICR)WFDC10A (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWFDC10A
EVEXWFDC10A
GoPubMedWFDC10A
iHOPWFDC10A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:42:26 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.