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WFDC11 (WAP four-disulfide core domain 11)

Identity

Alias_symbol (synonym)WAP11
Other alias
HGNC (Hugo) WFDC11
LocusID (NCBI) 259239
Atlas_Id 75749
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45648563 and ends at 45670239 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHD6 (20q12) / WFDC11 (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WFDC11   20478
Cards
Entrez_Gene (NCBI)WFDC11  259239  WAP four-disulfide core domain 11
AliasesWAP11
GeneCards (Weizmann)WFDC11
Ensembl hg19 (Hinxton)ENSG00000180083 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180083 [Gene_View]  chr20:45648563-45670239 [Contig_View]  WFDC11 [Vega]
ICGC DataPortalENSG00000180083
TCGA cBioPortalWFDC11
AceView (NCBI)WFDC11
Genatlas (Paris)WFDC11
WikiGenes259239
SOURCE (Princeton)WFDC11
Genetics Home Reference (NIH)WFDC11
Genomic and cartography
GoldenPath hg38 (UCSC)WFDC11  -     chr20:45648563-45670239 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WFDC11  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblWFDC11 - 20q13.12 [CytoView hg19]  WFDC11 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIWFDC11 [Mapview hg19]  WFDC11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY047609 BC062670 HQ447593
RefSeq transcript (Entrez)NM_147197
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WFDC11
Cluster EST : UnigeneHs.374924 [ NCBI ]
CGAP (NCI)Hs.374924
Alternative Splicing GalleryENSG00000180083
Gene ExpressionWFDC11 [ NCBI-GEO ]   WFDC11 [ EBI - ARRAY_EXPRESS ]   WFDC11 [ SEEK ]   WFDC11 [ MEM ]
Gene Expression Viewer (FireBrowse)WFDC11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)259239
GTEX Portal (Tissue expression)WFDC11
Human Protein AtlasENSG00000180083-WFDC11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEX6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEX6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEX6
Splice isoforms : SwissVarQ8NEX6
PhosPhoSitePlusQ8NEX6
Domains : Interpro (EBI)WFDC9/WFDC11   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain structure : Prodom (Prabi Lyon)WFDC9_WDFC11 (PD288743)   
Conserved Domain (NCBI)WFDC11
DMDM Disease mutations259239
Blocks (Seattle)WFDC11
SuperfamilyQ8NEX6
Human Protein Atlas [tissue]ENSG00000180083-WFDC11 [tissue]
Peptide AtlasQ8NEX6
HPRD15673
IPIIPI00168792   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEX6
IntAct (EBI)Q8NEX6
FunCoupENSG00000180083
BioGRIDWFDC11
STRING (EMBL)WFDC11
ZODIACWFDC11
Ontologies - Pathways
QuickGOQ8NEX6
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkWFDC11
Atlas of Cancer Signalling NetworkWFDC11
Wikipedia pathwaysWFDC11
Orthology - Evolution
OrthoDB259239
GeneTree (enSembl)ENSG00000180083
Phylogenetic Trees/Animal Genes : TreeFamWFDC11
HOVERGENQ8NEX6
HOGENOMQ8NEX6
Homologs : HomoloGeneWFDC11
Homology/Alignments : Family Browser (UCSC)WFDC11
Gene fusions - Rearrangements
Tumor Fusion PortalWFDC11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWFDC11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WFDC11
dbVarWFDC11
ClinVarWFDC11
1000_GenomesWFDC11 
Exome Variant ServerWFDC11
ExAC (Exome Aggregation Consortium)ENSG00000180083
GNOMAD BrowserENSG00000180083
Genetic variants : HAPMAP259239
Genomic Variants (DGV)WFDC11 [DGVbeta]
DECIPHERWFDC11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWFDC11 
Mutations
ICGC Data PortalWFDC11 
TCGA Data PortalWFDC11 
Broad Tumor PortalWFDC11
OASIS PortalWFDC11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWFDC11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWFDC11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WFDC11
DgiDB (Drug Gene Interaction Database)WFDC11
DoCM (Curated mutations)WFDC11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WFDC11 (select a term)
intoGenWFDC11
Cancer3DWFDC11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETWFDC11
MedgenWFDC11
Genetic Testing Registry WFDC11
NextProtQ8NEX6 [Medical]
TSGene259239
GENETestsWFDC11
Target ValidationWFDC11
Huge Navigator WFDC11 [HugePedia]
snp3D : Map Gene to Disease259239
BioCentury BCIQWFDC11
ClinGenWFDC11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD259239
Chemical/Pharm GKB GenePA134905167
Clinical trialWFDC11
Miscellaneous
canSAR (ICR)WFDC11 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWFDC11
EVEXWFDC11
GoPubMedWFDC11
iHOPWFDC11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:21:46 CET 2017

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