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WFDC11 (WAP four-disulfide core domain 11)

Identity

Alias (NCBI)WAP11
HGNC (Hugo) WFDC11
HGNC Alias symbWAP11
LocusID (NCBI) 259239
Atlas_Id 75749
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45648563 and ends at 45670239 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHD6 (20q12) / WFDC11 (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)WFDC11   20478
Cards
Entrez_Gene (NCBI)WFDC11    WAP four-disulfide core domain 11
AliasesWAP11
GeneCards (Weizmann)WFDC11
Ensembl hg19 (Hinxton)ENSG00000180083 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180083 [Gene_View]  ENSG00000180083 [Sequence]  chr20:45648563-45670239 [Contig_View]  WFDC11 [Vega]
ICGC DataPortalENSG00000180083
TCGA cBioPortalWFDC11
AceView (NCBI)WFDC11
Genatlas (Paris)WFDC11
SOURCE (Princeton)WFDC11
Genetics Home Reference (NIH)WFDC11
Genomic and cartography
GoldenPath hg38 (UCSC)WFDC11  -     chr20:45648563-45670239 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WFDC11  -     20q13.12   [Description]    (hg19-Feb_2009)
GoldenPathWFDC11 - 20q13.12 [CytoView hg19]  WFDC11 - 20q13.12 [CytoView hg38]
ImmunoBaseENSG00000180083
Genome Data Viewer NCBIWFDC11 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AY047609 BC062670
RefSeq transcript (Entrez)NM_147197
Consensus coding sequences : CCDS (NCBI)WFDC11
Gene ExpressionWFDC11 [ NCBI-GEO ]   WFDC11 [ EBI - ARRAY_EXPRESS ]   WFDC11 [ SEEK ]   WFDC11 [ MEM ]
Gene Expression Viewer (FireBrowse)WFDC11 [ Firebrowse - Broad ]
GenevisibleExpression of WFDC11 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)259239
GTEX Portal (Tissue expression)WFDC11
Human Protein AtlasENSG00000180083-WFDC11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEX6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEX6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEX6
PhosPhoSitePlusQ8NEX6
Domains : Interpro (EBI)WFDC11   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)WFDC11
SuperfamilyQ8NEX6
AlphaFold pdb e-kbQ8NEX6   
Human Protein Atlas [tissue]ENSG00000180083-WFDC11 [tissue]
HPRD15673
Protein Interaction databases
DIP (DOE-UCLA)Q8NEX6
IntAct (EBI)Q8NEX6
BioGRIDWFDC11
STRING (EMBL)WFDC11
ZODIACWFDC11
Ontologies - Pathways
QuickGOQ8NEX6
Ontology : AmiGOserine-type endopeptidase inhibitor activity  extracellular space  negative regulation of endopeptidase activity  antibacterial humoral response  innate immune response  
Ontology : EGO-EBIserine-type endopeptidase inhibitor activity  extracellular space  negative regulation of endopeptidase activity  antibacterial humoral response  innate immune response  
NDEx NetworkWFDC11
Atlas of Cancer Signalling NetworkWFDC11
Wikipedia pathwaysWFDC11
Orthology - Evolution
OrthoDB259239
GeneTree (enSembl)ENSG00000180083
Phylogenetic Trees/Animal Genes : TreeFamWFDC11
Homologs : HomoloGeneWFDC11
Homology/Alignments : Family Browser (UCSC)WFDC11
Gene fusions - Rearrangements
Fusion : QuiverWFDC11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWFDC11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WFDC11
dbVarWFDC11
ClinVarWFDC11
MonarchWFDC11
1000_GenomesWFDC11 
Exome Variant ServerWFDC11
GNOMAD BrowserENSG00000180083
Varsome BrowserWFDC11
ACMGWFDC11 variants
VarityQ8NEX6
Genomic Variants (DGV)WFDC11 [DGVbeta]
DECIPHERWFDC11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWFDC11 
Mutations
ICGC Data PortalWFDC11 
TCGA Data PortalWFDC11 
Broad Tumor PortalWFDC11
OASIS PortalWFDC11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWFDC11  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DWFDC11
Mutations and Diseases : HGMDWFDC11
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaWFDC11
DgiDB (Drug Gene Interaction Database)WFDC11
DoCM (Curated mutations)WFDC11
CIViC (Clinical Interpretations of Variants in Cancer)WFDC11
Cancer3DWFDC11
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETWFDC11
MedgenWFDC11
Genetic Testing Registry WFDC11
NextProtQ8NEX6 [Medical]
GENETestsWFDC11
Target ValidationWFDC11
Huge Navigator WFDC11 [HugePedia]
ClinGenWFDC11
Clinical trials, drugs, therapy
MyCancerGenomeWFDC11
Protein Interactions : CTDWFDC11
Pharm GKB GenePA134905167
PharosQ8NEX6
Clinical trialWFDC11
Miscellaneous
canSAR (ICR)WFDC11
HarmonizomeWFDC11
DataMed IndexWFDC11
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXWFDC11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:28:32 CEST 2021

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