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WFDC12 (WAP four-disulfide core domain 12)

Identity

Alias_namesC20orf122
chromosome 20 open reading frame 122
Alias_symbol (synonym)dJ211D12.4
WAP2
Other aliasSWAM2
HGNC (Hugo) WFDC12
LocusID (NCBI) 128488
Atlas_Id 75750
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45123426 and ends at 45124465 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WFDC12   16115
Cards
Entrez_Gene (NCBI)WFDC12  128488  WAP four-disulfide core domain 12
AliasesC20orf122; SWAM2; WAP2; dJ211D12.4
GeneCards (Weizmann)WFDC12
Ensembl hg19 (Hinxton)ENSG00000168703 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168703 [Gene_View]  chr20:45123426-45124465 [Contig_View]  WFDC12 [Vega]
ICGC DataPortalENSG00000168703
TCGA cBioPortalWFDC12
AceView (NCBI)WFDC12
Genatlas (Paris)WFDC12
WikiGenes128488
SOURCE (Princeton)WFDC12
Genetics Home Reference (NIH)WFDC12
Genomic and cartography
GoldenPath hg38 (UCSC)WFDC12  -     chr20:45123426-45124465 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WFDC12  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblWFDC12 - 20q13.12 [CytoView hg19]  WFDC12 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIWFDC12 [Mapview hg19]  WFDC12 [Mapview hg38]
OMIM609872   
Gene and transcription
Genbank (Entrez)AY037803 AY358678 BC140217 BC146514
RefSeq transcript (Entrez)NM_080869
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WFDC12
Cluster EST : UnigeneHs.352180 [ NCBI ]
CGAP (NCI)Hs.352180
Alternative Splicing GalleryENSG00000168703
Gene ExpressionWFDC12 [ NCBI-GEO ]   WFDC12 [ EBI - ARRAY_EXPRESS ]   WFDC12 [ SEEK ]   WFDC12 [ MEM ]
Gene Expression Viewer (FireBrowse)WFDC12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128488
GTEX Portal (Tissue expression)WFDC12
Human Protein AtlasENSG00000168703-WFDC12 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWY7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWY7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWY7
Splice isoforms : SwissVarQ8WWY7
PhosPhoSitePlusQ8WWY7
Domaine pattern : Prosite (Expaxy)WAP (PS51390)   
Domains : Interpro (EBI)WAP_dom   
Domain families : Pfam (Sanger)WAP (PF00095)   
Domain families : Pfam (NCBI)pfam00095   
Domain families : Smart (EMBL)WAP (SM00217)  
Conserved Domain (NCBI)WFDC12
DMDM Disease mutations128488
Blocks (Seattle)WFDC12
SuperfamilyQ8WWY7
Human Protein Atlas [tissue]ENSG00000168703-WFDC12 [tissue]
Peptide AtlasQ8WWY7
HPRD15674
IPIIPI00150196   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWY7
IntAct (EBI)Q8WWY7
FunCoupENSG00000168703
BioGRIDWFDC12
STRING (EMBL)WFDC12
ZODIACWFDC12
Ontologies - Pathways
QuickGOQ8WWY7
Ontology : AmiGOserine-type endopeptidase inhibitor activity  extracellular region  negative regulation of endopeptidase activity  defense response to bacterium  
Ontology : EGO-EBIserine-type endopeptidase inhibitor activity  extracellular region  negative regulation of endopeptidase activity  defense response to bacterium  
NDEx NetworkWFDC12
Atlas of Cancer Signalling NetworkWFDC12
Wikipedia pathwaysWFDC12
Orthology - Evolution
OrthoDB128488
GeneTree (enSembl)ENSG00000168703
Phylogenetic Trees/Animal Genes : TreeFamWFDC12
HOVERGENQ8WWY7
HOGENOMQ8WWY7
Homologs : HomoloGeneWFDC12
Homology/Alignments : Family Browser (UCSC)WFDC12
Gene fusions - Rearrangements
Tumor Fusion PortalWFDC12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWFDC12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WFDC12
dbVarWFDC12
ClinVarWFDC12
1000_GenomesWFDC12 
Exome Variant ServerWFDC12
ExAC (Exome Aggregation Consortium)ENSG00000168703
GNOMAD BrowserENSG00000168703
Genetic variants : HAPMAP128488
Genomic Variants (DGV)WFDC12 [DGVbeta]
DECIPHERWFDC12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWFDC12 
Mutations
ICGC Data PortalWFDC12 
TCGA Data PortalWFDC12 
Broad Tumor PortalWFDC12
OASIS PortalWFDC12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWFDC12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWFDC12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WFDC12
DgiDB (Drug Gene Interaction Database)WFDC12
DoCM (Curated mutations)WFDC12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WFDC12 (select a term)
intoGenWFDC12
Cancer3DWFDC12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609872   
Orphanet
DisGeNETWFDC12
MedgenWFDC12
Genetic Testing Registry WFDC12
NextProtQ8WWY7 [Medical]
TSGene128488
GENETestsWFDC12
Target ValidationWFDC12
Huge Navigator WFDC12 [HugePedia]
snp3D : Map Gene to Disease128488
BioCentury BCIQWFDC12
ClinGenWFDC12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128488
Chemical/Pharm GKB GenePA25663
Clinical trialWFDC12
Miscellaneous
canSAR (ICR)WFDC12 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWFDC12
EVEXWFDC12
GoPubMedWFDC12
iHOPWFDC12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:21:46 CET 2017

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