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WFDC13 (WAP four-disulfide core domain 13)

Identity

Alias_namesC20orf138
chromosome 20 open reading frame 138
Alias_symbol (synonym)dJ601O1.3
WAP13
Other alias
HGNC (Hugo) WFDC13
LocusID (NCBI) 164237
Atlas_Id 75751
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45702016 and ends at 45708817 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WFDC13   16131
Cards
Entrez_Gene (NCBI)WFDC13  164237  WAP four-disulfide core domain 13
AliasesC20orf138; WAP13; dJ601O1.3
GeneCards (Weizmann)WFDC13
Ensembl hg19 (Hinxton)ENSG00000168634 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168634 [Gene_View]  chr20:45702016-45708817 [Contig_View]  WFDC13 [Vega]
ICGC DataPortalENSG00000168634
TCGA cBioPortalWFDC13
AceView (NCBI)WFDC13
Genatlas (Paris)WFDC13
WikiGenes164237
SOURCE (Princeton)WFDC13
Genetics Home Reference (NIH)WFDC13
Genomic and cartography
GoldenPath hg38 (UCSC)WFDC13  -     chr20:45702016-45708817 +  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WFDC13  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblWFDC13 - 20q13.12 [CytoView hg19]  WFDC13 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIWFDC13 [Mapview hg19]  WFDC13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF454505 BC104423 BC172328
RefSeq transcript (Entrez)NM_172005
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WFDC13
Cluster EST : UnigeneHs.690734 [ NCBI ]
CGAP (NCI)Hs.690734
Alternative Splicing GalleryENSG00000168634
Gene ExpressionWFDC13 [ NCBI-GEO ]   WFDC13 [ EBI - ARRAY_EXPRESS ]   WFDC13 [ SEEK ]   WFDC13 [ MEM ]
Gene Expression Viewer (FireBrowse)WFDC13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)164237
GTEX Portal (Tissue expression)WFDC13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUB5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUB5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUB5
Splice isoforms : SwissVarQ8IUB5
PhosPhoSitePlusQ8IUB5
Domains : Interpro (EBI)WAP_dom    WFDC13   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)WFDC13
DMDM Disease mutations164237
Blocks (Seattle)WFDC13
SuperfamilyQ8IUB5
Human Protein AtlasENSG00000168634
Peptide AtlasQ8IUB5
HPRD15675
IPIIPI00216708   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUB5
IntAct (EBI)Q8IUB5
FunCoupENSG00000168634
BioGRIDWFDC13
STRING (EMBL)WFDC13
ZODIACWFDC13
Ontologies - Pathways
QuickGOQ8IUB5
Ontology : AmiGOserine-type endopeptidase inhibitor activity  extracellular region  negative regulation of endopeptidase activity  
Ontology : EGO-EBIserine-type endopeptidase inhibitor activity  extracellular region  negative regulation of endopeptidase activity  
NDEx NetworkWFDC13
Atlas of Cancer Signalling NetworkWFDC13
Wikipedia pathwaysWFDC13
Orthology - Evolution
OrthoDB164237
GeneTree (enSembl)ENSG00000168634
Phylogenetic Trees/Animal Genes : TreeFamWFDC13
HOVERGENQ8IUB5
HOGENOMQ8IUB5
Homologs : HomoloGeneWFDC13
Homology/Alignments : Family Browser (UCSC)WFDC13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWFDC13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WFDC13
dbVarWFDC13
ClinVarWFDC13
1000_GenomesWFDC13 
Exome Variant ServerWFDC13
ExAC (Exome Aggregation Consortium)WFDC13 (select the gene name)
Genetic variants : HAPMAP164237
Genomic Variants (DGV)WFDC13 [DGVbeta]
DECIPHERWFDC13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWFDC13 
Mutations
ICGC Data PortalWFDC13 
TCGA Data PortalWFDC13 
Broad Tumor PortalWFDC13
OASIS PortalWFDC13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWFDC13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWFDC13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WFDC13
DgiDB (Drug Gene Interaction Database)WFDC13
DoCM (Curated mutations)WFDC13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WFDC13 (select a term)
intoGenWFDC13
Cancer3DWFDC13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWFDC13
Genetic Testing Registry WFDC13
NextProtQ8IUB5 [Medical]
TSGene164237
GENETestsWFDC13
Huge Navigator WFDC13 [HugePedia]
snp3D : Map Gene to Disease164237
BioCentury BCIQWFDC13
ClinGenWFDC13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD164237
Chemical/Pharm GKB GenePA25680
Clinical trialWFDC13
Miscellaneous
canSAR (ICR)WFDC13 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWFDC13
EVEXWFDC13
GoPubMedWFDC13
iHOPWFDC13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:01:38 CEST 2017

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