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WFDC2 (WAP four-disulfide core domain 2)

Identity

Other namesEDDM4
HE4
WAP5
dJ461P17.6
HGNC (Hugo) WFDC2
LocusID (NCBI) 10406
Location 20q13.12
Location_base_pair Starts at 44098394 and ends at 44110172 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)WFDC2   15939
Entrez_Gene (NCBI)WFDC2  10406  WAP four-disulfide core domain 2
Cards
GeneCards (Weizmann)WFDC2
Ensembl (Hinxton)ENSG00000101443 [Gene_View]  chr20:44098394-44110172 [Contig_View]  WFDC2 [Vega]
AceView (NCBI)WFDC2
Genatlas (Paris)WFDC2
SOURCE (Stanford)NM_006103 NM_080733 NM_080734 NM_080735 NM_080736
Genomic and cartography
GoldenPath (UCSC)WFDC2  -  20q13.12   chr20:44098394-44110172 +  20q13.12   [Description]    (hg19-Feb_2009)
EnsemblWFDC2 - 20q13.12 [CytoView]
Mapping of homologs : NCBIWFDC2 [Mapview]
Gene and transcription
Genbank (Entrez)AF330259 AF330260 AF330261 AF330262 AK225528
RefSeq transcript (SRS)NM_006103 NM_080733 NM_080734 NM_080735 NM_080736
RefSeq transcript (Entrez)NM_006103 NM_080733 NM_080734 NM_080735 NM_080736
RefSeq genomic (SRS)AC_000152 NC_000020 NC_018931 NT_011362 NW_001838666 NW_004078102
RefSeq genomic (Entrez)AC_000152 NC_000020 NC_018931 NT_011362 NW_001838666 NW_004078102
Consensus coding sequences : CCDS (NCBI)WFDC2
Cluster EST : UnigeneHs.2719 [ SRS ] Hs.2719 [ NCBI ]
CGAP (NCI)Hs.2719
Alternative Splicing : Fast-db (Paris)GSHG0018784
Alternative Splicing GalleryENSG00000101443
Gene ExpressionWFDC2 [ NCBI-GEO ]   WFDC2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14508 (SRS) Q14508 (Uniprot)
NextProtQ14508
With graphics : InterProQ14508
Splice isoforms : SwissVarQ14508(Swissvar)
Domaine pattern : Prosite (SRS)WAP (PS51390)   
Domaine pattern : Prosite (Expaxy)WAP (PS51390)   
Domains : Interpro (SRS)WAP-type_4-diS_core   
Domains : Interpro (EBI)WAP-type_4-diS_core   
Related proteins : CluSTrQ14508
Domain families : Pfam (SRS)WAP (PF00095)   
Domain families : Pfam (Sanger)WAP (PF00095)   
Domain families : Pfam (NCBI)pfam00095   
Domain families : Smart (EMBL)WAP (SM00217)  
DMDM10406
Blocks (Seattle)Q14508
Human Protein AtlasENSG00000101443
HPRD11684
IPIIPI00291488   IPI00103636   IPI00183629   IPI00103639   IPI00103633   IPI00853597   
Protein Interaction databases
DIP (DOE-UCLA)Q14508
IntAct (EBI)Q14508
FunCoupENSG00000101443
REACTOMEWFDC2
Protein Interaction Database10406
BioGRIDWFDC2
InParanoidQ14508
Interologous Interaction database Q14508
IntegromeDBWFDC2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)WFDC2
SNP (GeneSNP Utah)WFDC2
SNP : HGBaseWFDC2
Genetic variants : HAPMAPWFDC2
Somatic Mutations in Cancer : COSMICWFDC2 
CONAN: Copy Number AnalysisWFDC2 
Mutations and Diseases : HGMDWFDC2
OMIM
GENETests
Disease Genetic AssociationWFDC2
Huge Navigator WFDC2 [HugePedia]  WFDC2 [HugeCancerGEM]
Genomic VariantsWFDC2  WFDC2 [DGVbeta]
ClinVarWFDC2
snp3D : Map Gene to Disease10406
General knowledge
Homologs : HomoloGeneWFDC2
Homology/Alignments : Family Browser (UCSC)WFDC2
Phylogenetic Trees/Animal Genes : TreeFamWFDC2
Chemical/Protein Interactions : CTD10406
Chemical/Pharm GKB GenePA38059
Clinical trialWFDC2
Cancer Resource (Charite)ENSG00000101443
Ontology : AmiGOendopeptidase inhibitor activity  serine-type endopeptidase inhibitor activity  extracellular space  proteolysis  spermatogenesis  negative regulation of endopeptidase activity  
Ontology : EGO-EBIendopeptidase inhibitor activity  serine-type endopeptidase inhibitor activity  extracellular space  proteolysis  spermatogenesis  negative regulation of endopeptidase activity  
Other databases
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
PubGeneWFDC2
iHOPWFDC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:49:48 CEST 2013
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